Variant report

Variant	rs11024585
Chromosome Location	chr11:18276223-18276224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10832912	0.92[ASN][1000 genomes]
rs10832913	0.94[CHB][hapmap];0.85[CHD][hapmap]
rs12282742	1.00[ASW][hapmap]
rs1993373	0.95[CHB][hapmap]
rs2896522	0.91[ASN][1000 genomes]
rs3758946	1.00[ASW][hapmap]
rs4638289	0.95[CHB][hapmap]
rs7112278	0.95[CHB][hapmap];0.88[CHD][hapmap]
rs7950019	0.95[CHB][hapmap];0.88[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18260000-18278200	Weak transcription	Aorta	Aorta
2	chr11:18273800-18283400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:18274600-18276800	Enhancers	Adipose Nuclei	Adipose
4	chr11:18276000-18276400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:18276000-18276400	Enhancers	Left Ventricle	heart
6	chr11:18276000-18276800	Enhancers	Esophagus	oesophagus
7	chr11:18276200-18276400	Bivalent Enhancer	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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