Variant report

Variant	rs11024632
Chromosome Location	chr11:18389477-18389478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:18385990..18389914-chr11:18403284..18406325,4	K562	blood:
2	chr11:18386676..18389671-chr11:18414694..18418996,3	MCF-7	breast:
3	chr11:18339570..18341563-chr11:18389035..18391001,2	K562	blood:

Variant related genes	Relation type
ENSG00000134333	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11024605	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11024607	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11024609	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11024610	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11024611	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11024612	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11024615	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11024619	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11024621	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11024625	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221676	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12224608	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1869786	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1869787	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3781944	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4150530	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4150572	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4150626	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150635	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4150658	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4237721	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4344464	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4366463	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4586132	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756938	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4757639	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4757642	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757646	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60677587	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7113249	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7122032	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7128017	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7128146	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73430865	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73430866	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73430881	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73430888	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73430894	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73432712	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73434649	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9783296	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv933836	chr11:18300254-18440933	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
4	nsv1047049	chr11:18359702-18520008	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv540955	chr11:18359702-18520008	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	nsv523373	chr11:18382911-18401531	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18345000-18405000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:18346800-18390400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:18361800-18391600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:18363000-18390200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:18363200-18393000	Weak transcription	Fetal Heart	heart
6	chr11:18367600-18390000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:18373200-18390600	Strong transcription	Adipose Nuclei	Adipose
8	chr11:18373400-18390000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:18373400-18390400	Strong transcription	Dnd41	blood
10	chr11:18373600-18389800	Strong transcription	Liver	Liver
11	chr11:18373600-18389800	Strong transcription	Duodenum Mucosa	Duodenum
12	chr11:18373600-18390200	Strong transcription	Fetal Thymus	thymus
13	chr11:18373600-18390400	Strong transcription	Placenta	Placenta
14	chr11:18373600-18391200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:18373800-18390400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:18374800-18389800	Strong transcription	Fetal Muscle Leg	muscle
17	chr11:18374800-18390200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:18377200-18390000	Strong transcription	Fetal Brain Female	brain
19	chr11:18382600-18390400	Strong transcription	Primary B cells from cord blood	blood
20	chr11:18382800-18390000	Strong transcription	Brain Cingulate Gyrus	brain
21	chr11:18383800-18390000	Weak transcription	Fetal Brain Male	brain
22	chr11:18383800-18390000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr11:18383800-18391400	Weak transcription	Colonic Mucosa	Colon
24	chr11:18385000-18390000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:18385000-18392600	Weak transcription	Small Intestine	intestine
26	chr11:18385800-18389800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:18386000-18390400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr11:18386200-18389800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr11:18387000-18390000	Weak transcription	Right Atrium	heart
30	chr11:18387200-18389600	Genic enhancers	Primary monocytes fromperipheralblood	blood
31	chr11:18387400-18390000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:18387600-18389800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:18387600-18390600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr11:18387600-18390600	Weak transcription	Spleen	Spleen
35	chr11:18387600-18391200	Weak transcription	Brain Angular Gyrus	brain
36	chr11:18387600-18391400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:18387600-18391400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:18387600-18391400	Weak transcription	Aorta	Aorta
39	chr11:18387600-18391400	Weak transcription	Right Ventricle	heart
40	chr11:18387600-18391600	Enhancers	Primary hematopoietic stem cells	blood
41	chr11:18387600-18393200	Weak transcription	Gastric	stomach
42	chr11:18387600-18394000	Weak transcription	Fetal Stomach	stomach
43	chr11:18387600-18395400	Weak transcription	Lung	lung
44	chr11:18387600-18398600	Weak transcription	Ovary	ovary
45	chr11:18387600-18404200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:18387600-18404400	Weak transcription	Esophagus	oesophagus
47	chr11:18387600-18404800	Weak transcription	Pancreas	Pancrea
48	chr11:18387800-18391000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr11:18387800-18404400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr11:18388000-18389600	Weak transcription	Placenta Amnion	Placenta Amnion

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