Variant report

Variant	rs11024637
Chromosome Location	chr11:18406439-18406440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr11:18404488-18406439	A549	lung:	n/a	chr11:18405375-18405385 chr11:18405903-18405916 chr11:18405375-18405385
2	EP300	chr11:18404996-18406481	A549	lung:	n/a	n/a
3	GATA3	chr11:18404648-18406556	A549	lung:	n/a	chr11:18406216-18406227
4	MAX	chr11:18404259-18406548	A549	lung:	n/a	chr11:18405030-18405039 chr11:18405600-18405610
5	RCOR1	chr11:18404637-18406589	IMR90	lung:	n/a	n/a
6	NR3C1	chr11:18405023-18406523	A549	lung:	n/a	chr11:18405827-18405840 chr11:18405520-18405528 chr11:18405463-18405472
7	REST	chr11:18404578-18406561	A549	lung:	n/a	chr11:18405236-18405243 chr11:18405824-18405837 chr11:18405820-18405840 chr11:18405821-18405839 chr11:18405820-18405840 chr11:18405033-18405042 chr11:18405822-18405832 chr11:18405820-18405834
8	SP1	chr11:18404724-18406478	A549	lung:	n/a	chr11:18405375-18405385 chr11:18405903-18405916 chr11:18405375-18405385
9	MAX	chr11:18404669-18406498	A549	lung:	n/a	chr11:18405030-18405039 chr11:18405600-18405610
10	TCF12	chr11:18404318-18406543	A549	lung:	n/a	n/a
11	SIX5	chr11:18404842-18406616	A549	lung:	n/a	n/a
12	EP300	chr11:18404876-18406550	A549	lung:	n/a	n/a
13	CEBPB	chr11:18405141-18406475	A549	lung:	n/a	n/a
14	FOSL2	chr11:18404533-18406453	A549	lung:	n/a	chr11:18405155-18405164 chr11:18406259-18406268 chr11:18405462-18405472 chr11:18405463-18405471 chr11:18405351-18405362 chr11:18405462-18405472
15	POLR2A	chr11:18404687-18406461	U87	brain:	n/a	n/a
16	BCL3	chr11:18404658-18406453	A549	lung:	n/a	chr11:18405880-18405888 chr11:18405033-18405042
17	CREB1	chr11:18405701-18406458	A549	lung:	n/a	n/a
18	POLR2A	chr11:18404693-18406455	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:18404260..18406442-chr11:18407385..18409678,2	MCF-7	breast:
2	chr11:18343373..18345684-chr11:18403945..18406882,4	MCF-7	breast:
3	chr11:18349981..18351945-chr11:18404895..18407239,2	MCF-7	breast:
4	chr11:18404604..18407545-chr11:18408793..18411812,5	K562	blood:

Variant related genes	Relation type
MIR3159	TF binding region
ENSG00000110756	Chromatin interaction
ENSG00000110768	Chromatin interaction
ENSG00000264603	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10832925	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10832928	0.97[EUR][1000 genomes]
rs11024642	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11024644	0.97[EUR][1000 genomes]
rs12269752	0.97[EUR][1000 genomes]
rs12273776	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12274166	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12274651	0.97[EUR][1000 genomes]
rs12275692	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12276166	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12284013	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12284667	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12287183	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12804008	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7932887	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv933836	chr11:18300254-18440933	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
4	nsv1047049	chr11:18359702-18520008	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv540955	chr11:18359702-18520008	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	esv1811183	chr11:18389643-18432437	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18403600-18406600	Enhancers	Fetal Intestine Small	intestine
2	chr11:18404200-18406600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:18404200-18406600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:18404200-18406600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:18404200-18406600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:18404200-18406600	Enhancers	Fetal Muscle Leg	muscle
7	chr11:18404200-18406600	Enhancers	Placenta	Placenta
8	chr11:18404200-18406600	Flanking Active TSS	Hela-S3	cervix
9	chr11:18404200-18407000	Enhancers	Fetal Intestine Large	intestine
10	chr11:18404200-18407200	Enhancers	Primary hematopoietic stem cells	blood
11	chr11:18404200-18407200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr11:18404400-18406600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:18404400-18406600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:18404400-18406600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:18404400-18406600	Enhancers	Fetal Heart	heart
16	chr11:18404400-18406600	Enhancers	Fetal Stomach	stomach
17	chr11:18404400-18406600	Enhancers	Small Intestine	intestine
18	chr11:18404400-18406600	Enhancers	Stomach Mucosa	stomach
19	chr11:18404400-18406600	Flanking Active TSS	A549	lung
20	chr11:18404400-18406600	Enhancers	HUVEC	blood vessel
21	chr11:18404400-18407000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr11:18404400-18407000	Enhancers	Right Atrium	heart
23	chr11:18404400-18407200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:18404400-18407200	Enhancers	Gastric	stomach
25	chr11:18404600-18406600	Enhancers	Primary B cells from cord blood	blood
26	chr11:18404800-18406600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:18404800-18406600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:18405400-18406600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:18405600-18406600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:18405800-18406600	Enhancers	Colon Smooth Muscle	Colon
31	chr11:18405800-18415600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:18406000-18406600	Enhancers	Thymus	Thymus
33	chr11:18406000-18406600	Enhancers	NH-A	brain
34	chr11:18406000-18406600	Enhancers	NHLF	lung
35	chr11:18406000-18406800	Enhancers	Fetal Thymus	thymus
36	chr11:18406000-18407200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr11:18406000-18407200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr11:18406000-18407800	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr11:18406000-18409400	Enhancers	Primary T cells fromperipheralblood	blood
40	chr11:18406200-18406600	Enhancers	Adipose Nuclei	Adipose
41	chr11:18406200-18406600	Enhancers	GM12878-XiMat	blood
42	chr11:18406200-18407000	Enhancers	Primary T cells from cord blood	blood
43	chr11:18406200-18407200	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr11:18406200-18408000	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr11:18406200-18409000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr11:18406200-18409200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr11:18406200-18409200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr11:18406200-18409200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:18406200-18409200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:18406400-18406600	Enhancers	Primary neutrophils fromperipheralblood	blood

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