Variant report

Variant	rs11024670
Chromosome Location	chr11:18497323-18497324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18489055..18490593-chr11:18496337..18497953,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10219166	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10832938	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10832942	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10832943	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10832945	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11024671	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11024674	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11024675	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11024676	0.86[EUR][1000 genomes]
rs11024678	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11024679	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11024683	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11024685	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11024689	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11024695	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11024696	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11024706	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11024716	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11024723	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11024724	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12049851	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12049909	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12049912	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12222210	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12223858	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12223887	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12225461	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12225463	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12290527	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12418726	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12419360	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12419592	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12420702	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12420882	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12421881	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12574333	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12575390	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12577874	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12803251	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16914838	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16935504	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2271080	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2279900	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2305166	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28607050	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3781639	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55964013	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55999230	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56097703	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56151250	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56151849	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56411332	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59032896	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61882885	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61882887	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61882903	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61882904	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61884677	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7108487	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7109314	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7130163	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72871737	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72876745	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7950602	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9633899	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv1047049	chr11:18359702-18520008	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv540955	chr11:18359702-18520008	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv897027	chr11:18435700-18499416	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1038015	chr11:18435855-18558211	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
7	nsv1042155	chr11:18435855-18697576	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
8	nsv467719	chr11:18447611-18542227	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv553634	chr11:18447611-18542227	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11024670	TSG101	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18477600-18498400	Weak transcription	Spleen	Spleen
2	chr11:18477800-18498000	Weak transcription	Fetal Brain Female	brain
3	chr11:18478200-18497600	Weak transcription	Right Ventricle	heart
4	chr11:18480000-18499400	Weak transcription	HSMMtube	muscle
5	chr11:18483600-18498400	Weak transcription	Aorta	Aorta
6	chr11:18483600-18526200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:18485800-18498200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:18487600-18497800	Weak transcription	Gastric	stomach
9	chr11:18488400-18501200	Weak transcription	Esophagus	oesophagus
10	chr11:18488400-18501400	Weak transcription	HepG2	liver
11	chr11:18488600-18497800	Weak transcription	Ovary	ovary
12	chr11:18488600-18498400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:18489000-18497800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr11:18489000-18497800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:18489400-18498400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:18489800-18500600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:18490400-18500000	Weak transcription	HUVEC	blood vessel
18	chr11:18491000-18499200	Weak transcription	GM12878-XiMat	blood
19	chr11:18491600-18498000	Weak transcription	Placenta	Placenta
20	chr11:18491800-18498400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:18492800-18501200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:18493200-18498600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:18493200-18500600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:18493400-18497400	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:18493400-18499200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:18493600-18497600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:18493600-18498800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:18493600-18500600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr11:18493600-18500800	Weak transcription	Brain Anterior Caudate	brain
30	chr11:18493600-18501400	Weak transcription	Colonic Mucosa	Colon
31	chr11:18493800-18497400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:18493800-18499600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:18493800-18500000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr11:18493800-18502200	Weak transcription	Fetal Brain Male	brain
35	chr11:18494000-18502000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr11:18494400-18508000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:18494600-18502000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:18494800-18497800	Weak transcription	Lung	lung
39	chr11:18494800-18507600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:18495000-18505800	Strong transcription	Thymus	Thymus
41	chr11:18495200-18497600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:18495200-18498000	Weak transcription	Primary B cells from cord blood	blood
43	chr11:18495200-18498600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:18495200-18499000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:18495200-18502200	Weak transcription	Pancreas	Pancrea
46	chr11:18495400-18497800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:18495400-18498200	Weak transcription	Left Ventricle	heart
48	chr11:18495400-18498400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:18495400-18499600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:18495400-18500600	Weak transcription	NHDF-Ad	bronchial

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