Variant report

Variant	rs11024682
Chromosome Location	chr11:18515221-18515222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11024722	1.00[AMR][1000 genomes]
rs12271315	1.00[AMR][1000 genomes]
rs12276407	1.00[AMR][1000 genomes]
rs12289644	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv1047049	chr11:18359702-18520008	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv540955	chr11:18359702-18520008	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1038015	chr11:18435855-18558211	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv1042155	chr11:18435855-18697576	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
7	nsv467719	chr11:18447611-18542227	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv553634	chr11:18447611-18542227	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18483600-18526200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:18496200-18538000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:18496200-18541200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:18496400-18542000	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr11:18496600-18540600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:18496600-18541000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:18500000-18547000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:18503200-18516200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:18504000-18540600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:18504200-18522800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:18504600-18523400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:18504600-18523400	Weak transcription	Small Intestine	intestine
13	chr11:18504600-18523600	Weak transcription	HMEC	breast
14	chr11:18505200-18531800	Weak transcription	Fetal Brain Male	brain
15	chr11:18506000-18519200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:18506400-18519600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:18507600-18516600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:18508000-18519600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:18508000-18520200	Weak transcription	Hela-S3	cervix
20	chr11:18509000-18520600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:18509000-18537600	Strong transcription	Liver	Liver
22	chr11:18509000-18540200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:18509000-18540600	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr11:18509200-18516800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:18509200-18517600	Strong transcription	Primary T cells from cord blood	blood
26	chr11:18509400-18515800	Strong transcription	Primary B cells from cord blood	blood
27	chr11:18509400-18516200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:18509600-18540200	Strong transcription	Placenta	Placenta
29	chr11:18509800-18517600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:18510200-18516800	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr11:18510800-18524400	Strong transcription	Dnd41	blood
32	chr11:18510800-18541400	Strong transcription	Primary B cells from peripheral blood	blood
33	chr11:18511000-18524400	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:18511200-18516600	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:18511800-18527000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:18512000-18520000	Weak transcription	Right Ventricle	heart
37	chr11:18512200-18519600	Weak transcription	NH-A	brain
38	chr11:18512400-18519600	Weak transcription	Fetal Kidney	kidney
39	chr11:18512600-18516000	Weak transcription	Colonic Mucosa	Colon
40	chr11:18512600-18519800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:18512800-18518200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:18512800-18523400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr11:18512800-18526800	Weak transcription	Spleen	Spleen
44	chr11:18513000-18515400	Enhancers	Duodenum Mucosa	Duodenum
45	chr11:18513000-18515600	Enhancers	Fetal Intestine Small	intestine
46	chr11:18513000-18516200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:18513000-18516200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:18513000-18516800	Weak transcription	Fetal Stomach	stomach
49	chr11:18513000-18518000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:18513000-18518200	Weak transcription	Aorta	Aorta

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