Variant report

Variant	rs11024797
Chromosome Location	chr11:18824315-18824316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11024850	0.87[CEU][hapmap];0.88[CHB][hapmap]
rs12275926	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12279933	0.89[ASN][1000 genomes]
rs12288925	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12801383	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12801569	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	esv2758257	chr11:18818729-19082068	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759806	chr11:18818729-19082068	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv428250	chr11:18818729-19082068	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18822600-18824400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:18822600-18824600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:18823200-18824400	Enhancers	Brain Substantia Nigra	brain
4	chr11:18823800-18824400	Enhancers	Brain Anterior Caudate	brain
5	chr11:18824000-18824800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:18824200-18824400	Enhancers	Brain Hippocampus Middle	brain
7	chr11:18824200-18824400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:18824200-18824600	Active TSS	Brain Cingulate Gyrus	brain
9	chr11:18824200-18824600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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