Variant report

Variant	rs11027277
Chromosome Location	chr11:23543683-23543684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10500961	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10500962	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11027279	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11027282	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12365071	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12802148	0.84[ASN][1000 genomes]
rs1462563	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1462564	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17306663	0.85[ASN][1000 genomes]
rs72879155	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs72879159	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs72879167	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7949586	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832087	chr11:23404474-23569183	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1051066	chr11:23459759-23550295	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23541200-23548600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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