Variant report

Variant	rs11027490
Chromosome Location	chr11:23801024-23801025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10430919	0.87[ASN][1000 genomes]
rs10500969	0.91[ASN][1000 genomes]
rs10732217	0.87[ASN][1000 genomes]
rs10732218	0.85[ASN][1000 genomes]
rs10742002	0.90[ASN][1000 genomes]
rs10742003	0.84[ASN][1000 genomes]
rs10742004	0.84[ASN][1000 genomes]
rs10767117	0.91[ASN][1000 genomes]
rs10767121	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10767122	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10767123	0.85[ASN][1000 genomes]
rs10834191	0.93[ASN][1000 genomes]
rs10834193	0.87[ASN][1000 genomes]
rs10834195	0.82[ASN][1000 genomes]
rs10834196	0.88[ASN][1000 genomes]
rs10834197	0.90[ASN][1000 genomes]
rs10834198	0.91[ASN][1000 genomes]
rs10834199	0.90[ASN][1000 genomes]
rs10834203	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12419586	0.88[ASN][1000 genomes]
rs1528552	0.86[ASN][1000 genomes]
rs1528553	0.87[ASN][1000 genomes]
rs1528554	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1528555	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1528556	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1528557	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3886450	0.86[ASN][1000 genomes]
rs4131590	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4131591	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4304772	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4315068	0.86[ASN][1000 genomes]
rs4316509	0.86[ASN][1000 genomes]
rs4319517	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4332526	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4512817	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4539323	0.83[ASN][1000 genomes]
rs4569007	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6483990	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7113510	0.86[ASN][1000 genomes]
rs7118415	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7123064	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7948427	0.86[ASN][1000 genomes]
rs7951414	0.86[ASN][1000 genomes]
rs7951424	0.86[ASN][1000 genomes]
rs7951537	0.86[ASN][1000 genomes]
rs7951542	0.86[ASN][1000 genomes]
rs7951878	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv897063	chr11:23723766-23940407	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv897064	chr11:23767292-23859991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv897065	chr11:23767292-23882931	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv897066	chr11:23777459-23859991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv897067	chr11:23777459-23861558	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897068	chr11:23777459-23882931	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv553765	chr11:23781534-23833286	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv553766	chr11:23781534-23841175	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv467741	chr11:23781534-23944659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv553767	chr11:23781534-23944659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv467742	chr11:23783338-23841175	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv467743	chr11:23783338-23841175	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv553768	chr11:23783338-23841175	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1054145	chr11:23796462-23860421	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv1053104	chr11:23796462-23870291	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv1054249	chr11:23796462-23883614	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv469943	chr11:23796710-23859991	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv527858	chr11:23796711-23859991	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv553769	chr11:23796711-23864290	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23799200-23803200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:23799600-23802400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:23800400-23802000	Enhancers	NH-A	brain
4	chr11:23800600-23802600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:23800800-23801200	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links