Variant report

Variant	rs11029670
Chromosome Location	chr11:26697218-26697219
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11029661	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs11029668	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271443	0.88[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278761	0.82[YRI][hapmap]
rs7128731	0.86[AFR][1000 genomes]
rs73436335	0.83[AMR][1000 genomes]
rs73436358	0.84[AFR][1000 genomes]
rs73436370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26688600-26702400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:26695200-26701800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:26697000-26697400	Enhancers	Rectal Smooth Muscle	rectum
4	chr11:26697000-26697800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:26697000-26699800	Enhancers	NHEK	skin
6	chr11:26697200-26697400	Enhancers	Liver	Liver
7	chr11:26697200-26698400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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