Variant report

Variant	rs11029796
Chromosome Location	chr11:27062975-27062976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FIBIN-1	chr11:27062763-27063025	NONHSAT018464

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10835106	0.89[ASN][1000 genomes]
rs11029802	0.89[ASN][1000 genomes]
rs11029807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12385796	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1445316	0.89[ASN][1000 genomes]
rs1445328	0.89[ASN][1000 genomes]
rs1596711	0.89[ASN][1000 genomes]
rs1596713	0.89[ASN][1000 genomes]
rs57875497	0.89[ASN][1000 genomes]
rs7106917	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107165	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108209	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949332	chr11:26935972-27223492	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897147	chr11:26983363-27258899	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1040964	chr11:26998213-27223388	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv540975	chr11:26998213-27223388	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv949575	chr11:27005687-27233359	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv533052	chr11:27006061-27225374	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv553912	chr11:27014032-27240951	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv467781	chr11:27019331-27240951	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv553913	chr11:27019331-27240951	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv897148	chr11:27026424-27071118	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv508619	chr11:27028494-27110734	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:27060600-27064000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:27061400-27063600	Enhancers	HMEC	breast
3	chr11:27061600-27063000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr11:27061600-27063200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:27061600-27063600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:27061600-27064000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:27061800-27063200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:27061800-27063200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:27061800-27063200	Enhancers	Aorta	Aorta
10	chr11:27061800-27063400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:27061800-27063400	Enhancers	Colon Smooth Muscle	Colon
12	chr11:27061800-27063400	Enhancers	Fetal Muscle Leg	muscle
13	chr11:27061800-27063400	Enhancers	Placenta	Placenta
14	chr11:27061800-27063600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:27061800-27064000	Active TSS	Brain Anterior Caudate	brain
16	chr11:27062000-27063200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:27062000-27063200	Enhancers	Liver	Liver
18	chr11:27062000-27063400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:27062000-27063600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:27062000-27064000	Enhancers	Fetal Stomach	stomach
21	chr11:27062200-27063000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:27062200-27063000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:27062200-27063200	Enhancers	NHEK	skin
24	chr11:27062200-27063400	Enhancers	Brain Germinal Matrix	brain
25	chr11:27062200-27063800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr11:27062200-27064000	Enhancers	Fetal Lung	lung
27	chr11:27062400-27063000	Enhancers	Fetal Thymus	thymus
28	chr11:27062400-27063200	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr11:27062400-27063200	Enhancers	Right Atrium	heart
30	chr11:27062400-27063400	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr11:27062400-27063600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:27062400-27063600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:27062800-27063000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:27062800-27063200	Enhancers	Esophagus	oesophagus
35	chr11:27062800-27063400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:27062800-27063600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr11:27062800-27063600	Enhancers	Skeletal Muscle Male	skeletal muscle

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