Variant report

Variant	rs11032317
Chromosome Location	chr11:33638406-33638407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10836077	0.81[EUR][1000 genomes]
rs11032305	0.82[EUR][1000 genomes]
rs11032306	0.83[CEU][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11032307	0.82[EUR][1000 genomes]
rs11032310	0.82[EUR][1000 genomes]
rs11032311	0.82[EUR][1000 genomes]
rs11823713	0.86[EUR][1000 genomes]
rs12277742	0.83[EUR][1000 genomes]
rs1321013	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs16924469	0.84[EUR][1000 genomes]
rs2076625	0.82[EUR][1000 genomes]
rs2076626	0.84[EUR][1000 genomes]
rs2273115	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2273117	0.82[EUR][1000 genomes]
rs2901321	0.82[EUR][1000 genomes]
rs34316641	0.81[EUR][1000 genomes]
rs34418271	0.81[EUR][1000 genomes]
rs34862267	0.83[EUR][1000 genomes]
rs34960900	0.82[EUR][1000 genomes]
rs35112514	0.84[EUR][1000 genomes]
rs35867834	0.81[EUR][1000 genomes]
rs35882323	0.86[EUR][1000 genomes]
rs35917507	0.83[EUR][1000 genomes]
rs35925175	0.90[AFR][1000 genomes]
rs4755201	0.82[EUR][1000 genomes]
rs4755207	0.82[EUR][1000 genomes]
rs4755718	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs55891606	0.81[EUR][1000 genomes]
rs61888322	0.82[EUR][1000 genomes]
rs7102647	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs7110105	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs7119677	0.81[EUR][1000 genomes]
rs7122768	0.82[EUR][1000 genomes]
rs7128963	0.81[EUR][1000 genomes]
rs735327	0.82[EUR][1000 genomes]
rs7939586	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044478	chr11:33008435-33656273	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1050944	chr11:33043155-33656273	Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv540993	chr11:33043155-33656273	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529212	chr11:33053073-33641691	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv869418	chr11:33053073-33662479	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	nsv832112	chr11:33469782-33683052	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33594600-33644000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:33605800-33642400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:33606600-33642000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:33619400-33639000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:33620200-33640200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:33620800-33639200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:33627200-33643400	Weak transcription	HSMMtube	muscle
8	chr11:33628800-33642400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:33630000-33641600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:33632800-33638800	Weak transcription	Brain Germinal Matrix	brain
11	chr11:33632800-33639000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:33632800-33642400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:33633800-33652400	Weak transcription	Fetal Brain Female	brain
14	chr11:33634600-33643800	Weak transcription	HUVEC	blood vessel
15	chr11:33635000-33638600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:33635000-33644800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:33635400-33638800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:33635800-33641800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:33636000-33638800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:33637800-33639800	Enhancers	Osteobl	bone
21	chr11:33638000-33638800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:33638200-33639000	Weak transcription	Brain Anterior Caudate	brain
23	chr11:33638200-33639600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:33638200-33639800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr11:33638200-33641400	Weak transcription	NHEK	skin
26	chr11:33638200-33641600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:33638200-33641600	Weak transcription	NHDF-Ad	bronchial
28	chr11:33638400-33638800	Weak transcription	HMEC	breast
29	chr11:33638400-33638800	Weak transcription	NH-A	brain

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