Variant report

Variant	rs11032362
Chromosome Location	chr11:33759092-33759093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:85)
CpG islands
(count:61)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:85 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr11:33758793-33759502	GM12878	blood:	n/a	n/a
2	IRF1	chr11:33758695-33759515	K562	blood:	n/a	chr11:33759208-33759221
3	RFX5	chr11:33758850-33759260	HepG2	liver:	n/a	n/a
4	BHLHE40	chr11:33758709-33759255	K562	blood:	n/a	n/a
5	GATA1	chr11:33758857-33759125	PBDEFetal	blood:	n/a	n/a
6	GTF2B	chr11:33758848-33759449	K562	blood:	n/a	n/a
7	MAZ	chr11:33757253-33759530	IMR90	lung:	n/a	chr11:33757825-33757835
8	ZNF143	chr11:33758724-33759342	K562	blood:	n/a	n/a
9	TEAD4	chr11:33757409-33759628	K562	blood:	n/a	n/a
10	CEBPD	chr11:33758749-33759631	K562	blood:	n/a	n/a
11	POLR2A	chr11:33757534-33759812	PBDE	blood:	n/a	n/a
12	REST	chr11:33758746-33759144	K562	blood:	n/a	n/a
13	ARID3A	chr11:33758779-33759517	K562	blood:	n/a	n/a
14	GATA2	chr11:33758778-33759421	K562	blood:	n/a	n/a
15	GATA1	chr11:33757516-33759858	PBDE	blood:	n/a	chr11:33759815-33759825
16	TEAD4	chr11:33758595-33759581	K562	blood:	n/a	n/a
17	POLR2A	chr11:33757529-33759454	K562	blood:	n/a	n/a
18	CUX1	chr11:33758896-33759865	K562	blood:	n/a	n/a
19	HMGN3	chr11:33758845-33759514	K562	blood:	n/a	n/a
20	EP300	chr11:33758828-33759389	K562	blood:	n/a	n/a
21	POLR2A	chr11:33757727-33759197	K562	blood:	n/a	n/a
22	POLR2A	chr11:33758735-33759452	K562	blood:	n/a	n/a
23	ZC3H11A	chr11:33758919-33759205	K562	blood:	n/a	n/a
24	GATA1	chr11:33757572-33759865	K562	blood:	n/a	chr11:33759815-33759825
25	YY1	chr11:33758871-33759109	K562	blood:	n/a	n/a
26	EGR1	chr11:33758732-33759374	K562	blood:	n/a	n/a
27	CEBPD	chr11:33758685-33759558	K562	blood:	n/a	n/a
28	CBX3	chr11:33758274-33759534	K562	blood:	n/a	n/a
29	STAT5A	chr11:33758671-33759511	K562	blood:	n/a	chr11:33759362-33759374
30	MYC	chr11:33757386-33759587	K562	blood:	n/a	chr11:33757825-33757835
31	SMARCA4	chr11:33758687-33759573	K562	blood:	n/a	n/a
32	TBL1XR1	chr11:33758712-33759168	K562	blood:	n/a	n/a
33	POLR2A	chr11:33758701-33759481	K562	blood:	n/a	n/a
34	MXI1	chr11:33755920-33759639	IMR90	lung:	n/a	n/a
35	MAX	chr11:33758793-33759142	K562	blood:	n/a	n/a
36	GABPA	chr11:33758779-33759223	K562	blood:	n/a	n/a
37	TBL1XR1	chr11:33757897-33759541	K562	blood:	n/a	n/a
38	PML	chr11:33758681-33759481	K562	blood:	n/a	n/a
39	UBTF	chr11:33757413-33759483	K562	blood:	n/a	n/a
40	EGR1	chr11:33758833-33759159	K562	blood:	n/a	n/a
41	MAFK	chr11:33758949-33759196	HepG2	liver:	n/a	n/a
42	MAZ	chr11:33757445-33759498	K562	blood:	n/a	chr11:33757825-33757835
43	TAL1	chr11:33758726-33759549	K562	blood:	n/a	n/a
44	HDAC2	chr11:33758722-33759200	K562	blood:	n/a	n/a
45	POLR2A	chr11:33758443-33759175	K562	blood:	n/a	n/a
46	POLR2A	chr11:33757561-33759417	K562	blood:	n/a	n/a
47	POLR2A	chr11:33757467-33759500	K562	blood:	n/a	n/a
48	SMARCB1	chr11:33758817-33759614	K562	blood:	n/a	n/a
49	MXI1	chr11:33758855-33759407	K562	blood:	n/a	n/a
50	MAX	chr11:33758634-33759472	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:33759043-33759093	IMR90	lung:	fetal
2	chr11:33759043-33759093	HRE	kidney:	n/a
3	chr11:33759043-33759093	HMEC	breast:	n/a
4	chr11:33759043-33759093	SK-N-SH	brain:	n/a
5	chr11:33759043-33759093	SK-N-SH_RA	brain:	n/a
6	chr11:33759043-33759093	A549	lung:	n/a
7	chr11:33759043-33759093	GM12878	blood:	n/a
8	chr11:33759043-33759093	ECC-1	luminal epithelium:	n/a
9	chr11:33759043-33759093	AG10803	skin:	n/a
10	chr11:33759043-33759093	HRPEpiC	eye:	n/a
11	chr11:33759043-33759093	Hepatocyte	liver:	n/a
12	chr11:33759043-33759093	PANC-1	pancreas:	n/a
13	chr11:33759043-33759093	H1-hESC	embryonic stem cell:	embryo
14	chr11:33759043-33759093	HEEpiC	esophagus:	n/a
15	chr11:33759043-33759093	HAEpiC	amniotic membrane:	n/a
16	chr11:33759043-33759093	GM12891	blood:	n/a
17	chr11:33759043-33759093	MCF-7	breast:	n/a
18	chr11:33759043-33759093	HUVEC	blood vessel:	n/a
19	chr11:33759043-33759093	BJ	skin:	n/a
20	chr11:33759043-33759093	ovcar-3	ovarian:	n/a
21	chr11:33759043-33759093	NT2-D1	testis:	n/a
22	chr11:33759043-33759093	Jurkat	blood:	n/a
23	chr11:33759043-33759093	K562	blood:	n/a
24	chr11:33759043-33759093	SK-N-MC	brain:	n/a
25	chr11:33759043-33759093	AG04450	lung:	fetal
26	chr11:33759043-33759093	HRCEpiC	kidney:	n/a
27	chr11:33759043-33759093	HPAEpiC	pulmonary alveolar:	n/a
28	chr11:33759043-33759093	GM12892	blood:	n/a
29	chr11:33759043-33759093	HL-60	blood:	n/a
30	chr11:33759043-33759093	CMK	blood:	n/a
31	chr11:33759043-33759093	PFSK-1	brain:	n/a
32	chr11:33759043-33759093	SKMC	muscle:	n/a
33	chr11:33759043-33759093	MCF10A-Er-Src	breast:	n/a
34	chr11:33759043-33759093	RPTEC	kidney:	n/a
35	chr11:33759043-33759093	HCT-116	colon:	n/a
36	chr11:33759043-33759093	U87	brain:	n/a
37	chr11:33759043-33759093	AG04449	skin:	fetal
38	chr11:33759043-33759093	HCPEpiC	choroid plexus:	n/a
39	chr11:33759043-33759093	NHBE	bronchial:	n/a
40	chr11:33759043-33759093	BE2_C	brain:	n/a
41	chr11:33759043-33759093	NHDF-neo	bronchial:	n/a
42	chr11:33759043-33759093	AG09319	gingival:	n/a
43	chr11:33759043-33759093	HIPEpiC	eye:	n/a
44	chr11:33759043-33759093	LNCaP	prostate:	n/a
45	chr11:33759043-33759093	HCF	heart:	n/a
46	chr11:33759043-33759093	AoSMC	blood vessel:	n/a
47	chr11:33759043-33759093	Caco-2	colon:	n/a
48	chr11:33759043-33759093	SAEC	small airway:	n/a
49	chr11:33759043-33759093	GM19239	blood:	n/a
50	chr11:33759043-33759093	HCM	heart:	n/a

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:33719802..33725980-chr11:33755197..33760109,10	MCF-7	breast:
2	chr11:33740386..33747828-chr11:33750725..33760528,16	K562	blood:
3	chr11:33740434..33748761-chr11:33752749..33759182,20	MCF-7	breast:
4	chr11:33756496..33759717-chr11:33794342..33798618,4	K562	blood:
5	chr11:33719762..33724651-chr11:33756445..33759986,5	K562	blood:
6	chr11:33720026..33726393-chr11:33756116..33759860,12	MCF-7	breast:
7	chr11:33735999..33748184-chr11:33752891..33760863,45	MCF-7	breast:
8	chr11:33757743..33759681-chr11:33794774..33797554,2	MCF-7	breast:
9	chr11:33758430..33760609-chr11:33786708..33788444,2	K562	blood:
10	chr11:33756868..33759532-chr11:33768759..33770986,2	MCF-7	breast:
11	chr11:33756399..33761777-chr11:33794455..33799644,9	K562	blood:

No data

Variant related genes	Relation type
CD59	TF binding region
CD59	CpG island
ENSG00000205177	Chromatin interaction
ENSG00000255272	Chromatin interaction
ENSG00000110429	Chromatin interaction
ENSG00000085063	Chromatin interaction
ENSG00000254508	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1402954	0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33757800-33764600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:33758000-33759400	Flanking Active TSS	NHEK	skin
3	chr11:33758000-33760400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:33758000-33764400	Weak transcription	Spleen	Spleen
5	chr11:33758000-33770200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:33758200-33759200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
7	chr11:33758200-33759200	Flanking Active TSS	HMEC	breast
8	chr11:33758200-33759200	Flanking Active TSS	HUVEC	blood vessel
9	chr11:33758200-33764400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:33758200-33764400	Weak transcription	Gastric	stomach
11	chr11:33758200-33766400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:33758400-33759200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:33758400-33759200	Enhancers	GM12878-XiMat	blood
14	chr11:33758400-33759400	Flanking Active TSS	Hela-S3	cervix
15	chr11:33758400-33759800	Flanking Active TSS	K562	blood
16	chr11:33758400-33764400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:33758400-33764400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:33758400-33764400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:33758400-33764400	Weak transcription	Thymus	Thymus
20	chr11:33758400-33764600	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr11:33758600-33759400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:33758600-33759400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr11:33758600-33759400	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr11:33758600-33759400	Enhancers	Fetal Intestine Large	intestine
25	chr11:33758600-33759400	Enhancers	Fetal Muscle Leg	muscle
26	chr11:33758600-33759400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr11:33758600-33759400	Enhancers	Stomach Mucosa	stomach
28	chr11:33758600-33759600	Enhancers	Fetal Stomach	stomach
29	chr11:33758600-33760000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:33758600-33763200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr11:33758600-33764200	Weak transcription	Primary B cells from cord blood	blood
32	chr11:33758600-33764200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:33758600-33764200	Weak transcription	Primary T cells from cord blood	blood
34	chr11:33758600-33764200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:33758600-33764400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:33758600-33764400	Weak transcription	Ovary	ovary
37	chr11:33758600-33765800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:33758600-33767800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr11:33758600-33770200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr11:33758800-33759200	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr11:33758800-33759200	Enhancers	Brain Anterior Caudate	brain
42	chr11:33758800-33759200	Weak transcription	Brain Germinal Matrix	brain
43	chr11:33758800-33759200	Enhancers	Duodenum Mucosa	Duodenum
44	chr11:33758800-33759200	Enhancers	Placenta Amnion	Placenta Amnion
45	chr11:33758800-33759200	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr11:33758800-33759200	Flanking Active TSS	NHDF-Ad	bronchial
47	chr11:33758800-33759400	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr11:33758800-33759400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:33758800-33759400	Enhancers	Adipose Nuclei	Adipose
50	chr11:33758800-33759400	Enhancers	Colon Smooth Muscle	Colon

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