Variant report

Variant	rs11032372
Chromosome Location	chr11:33786337-33786338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33786160..33788052-chr11:33788330..33790900,2	K562	blood:
2	chr11:33784551..33787595-chr11:33793972..33796128,3	K562	blood:
3	chr11:33777788..33782173-chr11:33783108..33786558,6	K562	blood:
4	chr11:33785223..33786784-chr11:33794755..33796851,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254508	Chromatin interaction
ENSG00000110429	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10768025	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10836107	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11032367	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11032373	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1112841	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12224154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12806824	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1522085	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1718067	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2272064	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2686245	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2746601	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2746602	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4348870	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6484665	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7116243	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7938603	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs831592	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs831595	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs831625	0.87[ASN][1000 genomes]
rs831635	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523356	chr11:33777334-33797408	Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11032372	CD59	cis	Artery Tibial	GTEx
rs11032372	CD59	Cis_1M	lymphoblastoid	RTeQTL
rs11032372	CD59	cis	Esophagus Muscularis	GTEx
rs11032372	CD59	cis	Thyroid	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33758800-33795000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:33759000-33795200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:33763200-33792200	Strong transcription	Fetal Thymus	thymus
4	chr11:33763200-33792400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:33764200-33792000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:33764400-33791200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:33764400-33792200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr11:33764400-33792400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr11:33764400-33792400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:33765400-33793800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:33766600-33787600	Weak transcription	Stomach Mucosa	stomach
12	chr11:33767400-33791400	Strong transcription	Placenta	Placenta
13	chr11:33767600-33792400	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:33767800-33792200	Strong transcription	Adipose Nuclei	Adipose
15	chr11:33767800-33792400	Strong transcription	Primary B cells from peripheral blood	blood
16	chr11:33769600-33795000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:33770200-33791200	Strong transcription	Liver	Liver
18	chr11:33770400-33789200	Weak transcription	NHLF	lung
19	chr11:33770800-33791600	Strong transcription	Duodenum Mucosa	Duodenum
20	chr11:33776800-33792200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:33777000-33792200	Strong transcription	Fetal Lung	lung
22	chr11:33777200-33792400	Strong transcription	Primary B cells from cord blood	blood
23	chr11:33778200-33792200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:33778800-33794600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:33779600-33795000	Weak transcription	Colonic Mucosa	Colon
26	chr11:33779800-33787200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:33780000-33792200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:33780400-33788200	Weak transcription	Hela-S3	cervix
29	chr11:33780800-33789000	Weak transcription	NH-A	brain
30	chr11:33781000-33787200	Weak transcription	HSMMtube	muscle
31	chr11:33781200-33786600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:33781600-33787200	Weak transcription	HUVEC	blood vessel
33	chr11:33782200-33787000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:33782200-33792000	Weak transcription	Aorta	Aorta
35	chr11:33782200-33793400	Weak transcription	Right Ventricle	heart
36	chr11:33783000-33790400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:33783600-33786600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr11:33783600-33790400	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:33783800-33787000	Weak transcription	GM12878-XiMat	blood
40	chr11:33783800-33787200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:33783800-33788200	Strong transcription	Fetal Brain Male	brain
42	chr11:33783800-33792000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:33784400-33790600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:33784600-33786400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr11:33784600-33786400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:33784600-33789200	Strong transcription	Ovary	ovary
47	chr11:33784600-33790400	Strong transcription	Brain Hippocampus Middle	brain
48	chr11:33784600-33790600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:33784600-33791400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:33784600-33792000	Strong transcription	Fetal Intestine Large	intestine

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