Variant report

Variant	rs11032703
Chromosome Location	chr11:34469656-34469657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34469619..34471124-chr11:34484849..34487654,2	K562	blood:
2	chr11:34387533..34389876-chr11:34467874..34469738,2	K562	blood:
3	chr11:34465093..34466959-chr11:34469031..34471331,3	MCF-7	breast:
4	chr11:34467629..34470088-chr11:34474933..34478324,3	K562	blood:
5	chr11:34463426..34466853-chr11:34467996..34471084,4	K562	blood:
6	chr11:34459310..34462934-chr11:34466311..34470636,5	K562	blood:
7	chr11:34468515..34471124-chr11:34484849..34487654,3	K562	blood:

Variant related genes	Relation type
ENSG00000121691	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11032655	0.85[AMR][1000 genomes]
rs1267466	1.00[ASW][hapmap]
rs17269847	0.87[MKK][hapmap]
rs881390	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv832114	chr11:34424428-34607851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11032703	DCDC1	cis	cerebellum	SCAN
rs11032703	ABTB2	cis	Whole Blood	GTEx
rs11032703	DEPDC7	cis	parietal	SCAN
rs11032703	CAT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34461400-34472200	Weak transcription	Aorta	Aorta
2	chr11:34461400-34473200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:34461400-34482800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:34461600-34470200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:34461600-34471400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:34461800-34469800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:34461800-34470200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:34461800-34471400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:34461800-34471400	Weak transcription	Placenta	Placenta
10	chr11:34461800-34471400	Weak transcription	HSMM	muscle
11	chr11:34461800-34471400	Weak transcription	NH-A	brain
12	chr11:34461800-34471400	Weak transcription	NHEK	skin
13	chr11:34461800-34472200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:34461800-34472200	Weak transcription	Esophagus	oesophagus
15	chr11:34461800-34472200	Weak transcription	Lung	lung
16	chr11:34461800-34485800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:34462000-34469800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:34462000-34469800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:34462000-34470600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:34462000-34470800	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:34462000-34470800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:34462000-34470800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:34462000-34470800	Weak transcription	Osteobl	bone
24	chr11:34462000-34471400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:34462000-34471400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:34462000-34471400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:34462000-34471400	Weak transcription	HUVEC	blood vessel
28	chr11:34462000-34471400	Weak transcription	NHLF	lung
29	chr11:34462000-34472200	Weak transcription	Fetal Stomach	stomach
30	chr11:34462000-34472200	Weak transcription	Right Ventricle	heart
31	chr11:34462000-34474600	Weak transcription	Fetal Brain Male	brain
32	chr11:34462000-34477600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:34462600-34471000	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr11:34462600-34471400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:34463400-34471400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:34463400-34473600	Weak transcription	Fetal Intestine Small	intestine
37	chr11:34463600-34469800	Weak transcription	Hela-S3	cervix
38	chr11:34463600-34470600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:34463600-34471200	Weak transcription	Brain Substantia Nigra	brain
40	chr11:34463600-34471200	Weak transcription	Fetal Brain Female	brain
41	chr11:34463600-34472400	Weak transcription	A549	lung
42	chr11:34463800-34470400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:34463800-34470800	Weak transcription	NHDF-Ad	bronchial
44	chr11:34464400-34470800	Weak transcription	Brain Anterior Caudate	brain
45	chr11:34464400-34471400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:34464600-34471400	Weak transcription	Right Atrium	heart
47	chr11:34464800-34470200	Enhancers	Liver	Liver
48	chr11:34465600-34470800	Weak transcription	Fetal Lung	lung
49	chr11:34465600-34471400	Weak transcription	Duodenum Mucosa	Duodenum
50	chr11:34465800-34469800	Enhancers	Fetal Heart	heart

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