Variant report

Variant	rs11032734
Chromosome Location	chr11:34534902-34534903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17271097	0.90[ASN][1000 genomes]
rs17356056	0.95[ASN][1000 genomes]
rs28395819	0.95[ASN][1000 genomes]
rs3824896	0.85[ASN][1000 genomes]
rs68135442	0.95[ASN][1000 genomes]
rs7949702	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv832114	chr11:34424428-34607851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv897211	chr11:34514941-34609541	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv897212	chr11:34523173-34621004	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34523800-34536800	Weak transcription	Right Atrium	heart
2	chr11:34531200-34535000	Weak transcription	Pancreas	Pancrea
3	chr11:34531200-34535000	Weak transcription	Spleen	Spleen
4	chr11:34531400-34535200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:34531800-34535000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:34534400-34535000	Enhancers	Placenta	Placenta
7	chr11:34534400-34535000	Enhancers	HepG2	liver
8	chr11:34534600-34535200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr11:34534600-34535400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:34534600-34536000	Enhancers	Brain Hippocampus Middle	brain
11	chr11:34534600-34536200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:34534600-34536200	Enhancers	Stomach Mucosa	stomach
13	chr11:34534800-34535800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr11:34534800-34536000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:34534800-34536000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:34534800-34536000	Weak transcription	A549	lung
17	chr11:34534800-34536200	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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