Variant report

Variant	rs11032977
Chromosome Location	chr11:4617827-4617828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1001697	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10836325	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836328	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836331	1.00[ASN][1000 genomes]
rs10836350	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11032955	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032968	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11033069	0.87[AMR][1000 genomes]
rs12420345	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1505204	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17314159	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1845363	0.87[AMR][1000 genomes]
rs2010719	0.81[ASN][1000 genomes]
rs2231963	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs2231970	0.85[CHB][hapmap]
rs3750992	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4104986	0.87[AMR][1000 genomes]
rs4243952	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4910511	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4910512	0.80[CHB][hapmap]
rs4910633	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4910634	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4910635	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4910638	0.84[ASN][1000 genomes]
rs7943486	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs931811	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs984496	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs999818	1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043803	chr11:4388448-4837042	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv540916	chr11:4388448-4837042	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv1048224	chr11:4390227-4920324	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
4	nsv540917	chr11:4390227-4920324	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
5	nsv896911	chr11:4400801-4806872	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	nsv1052736	chr11:4519302-4635855	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	nsv540921	chr11:4519302-4635855	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	nsv1047344	chr11:4524493-4630740	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	esv2762892	chr11:4541825-4619236	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv832055	chr11:4550894-4736340	Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv870335	chr11:4568743-4654458	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1054705	chr11:4582150-4687238	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	esv3424302	chr11:4585155-4880050	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
14	nsv896914	chr11:4587940-4631352	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv553173	chr11:4587940-4689742	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv1054801	chr11:4590126-4689520	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	nsv540923	chr11:4590126-4689520	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	nsv553174	chr11:4592718-4682376	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
19	nsv1041836	chr11:4594628-4685732	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
20	nsv540924	chr11:4594628-4685732	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	nsv1047741	chr11:4598125-4689520	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
22	nsv540925	chr11:4598125-4689520	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4610000-4619600	Weak transcription	Left Ventricle	heart
2	chr11:4611600-4621400	Weak transcription	Stomach Mucosa	stomach
3	chr11:4612000-4618600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:4612000-4622400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:4612400-4620800	Weak transcription	Brain Substantia Nigra	brain
6	chr11:4612400-4621400	Weak transcription	Small Intestine	intestine
7	chr11:4612600-4620800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:4612800-4618000	Weak transcription	Primary B cells from cord blood	blood
9	chr11:4612800-4621000	Weak transcription	A549	lung
10	chr11:4613000-4619600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr11:4613400-4619600	Weak transcription	Psoas Muscle	Psoas
12	chr11:4613600-4618600	Weak transcription	Aorta	Aorta
13	chr11:4613600-4619600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:4613600-4621000	Weak transcription	Fetal Kidney	kidney
15	chr11:4613800-4618000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:4613800-4618600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:4613800-4619400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:4614000-4619800	Weak transcription	Fetal Lung	lung
19	chr11:4614200-4618400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:4614200-4619800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:4614200-4620000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:4614400-4618800	Weak transcription	Gastric	stomach
23	chr11:4614600-4618600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr11:4614600-4618600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:4614600-4618600	Weak transcription	Fetal Stomach	stomach
26	chr11:4614600-4620600	Weak transcription	Lung	lung
27	chr11:4614600-4621200	Weak transcription	NHDF-Ad	bronchial
28	chr11:4614600-4622200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:4614800-4618000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr11:4614800-4618600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr11:4614800-4618600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr11:4614800-4618800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:4614800-4619000	Weak transcription	Brain Angular Gyrus	brain
34	chr11:4614800-4619200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr11:4614800-4621400	Weak transcription	HMEC	breast
36	chr11:4615000-4619800	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:4615000-4621200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:4615200-4618000	Weak transcription	Liver	Liver
39	chr11:4615200-4618600	Weak transcription	Fetal Muscle Leg	muscle
40	chr11:4615200-4619600	Weak transcription	Pancreas	Pancrea
41	chr11:4615200-4619600	Weak transcription	Thymus	Thymus
42	chr11:4615200-4620800	Weak transcription	NHLF	lung
43	chr11:4615200-4621000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:4615200-4627400	Strong transcription	Primary T cells from cord blood	blood
45	chr11:4615400-4618600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:4615400-4619200	Weak transcription	Placenta	Placenta
47	chr11:4615400-4619800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:4615600-4618600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:4615800-4618200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr11:4615800-4620600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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