Variant report

Variant	rs11032980
Chromosome Location	chr11:35060090-35060091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35058680..35060384-chr11:35065548..35067389,2	MCF-7	breast:
2	chr11:35059235..35060888-chr11:35161011..35163300,2	MCF-7	breast:
3	chr11:35050379..35055023-chr11:35058548..35063780,5	MCF-7	breast:
4	chr11:35054364..35057868-chr11:35058147..35061755,3	K562	blood:
5	chr11:35055142..35056681-chr11:35058687..35060261,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1547059	1.00[JPT][hapmap]
rs1547060	1.00[JPT][hapmap]
rs2065004	1.00[JPT][hapmap]
rs2114072	0.82[EUR][1000 genomes]
rs2553784	1.00[ASN][1000 genomes]
rs7116739	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1826391	chr11:35000983-35098193	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35052400-35061800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:35052800-35061800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:35052800-35066800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:35053000-35060600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr11:35053000-35062000	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:35053200-35061800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:35053800-35060200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr11:35054000-35061800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:35055400-35060200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr11:35055400-35060400	Weak transcription	Primary T cells from cord blood	blood
11	chr11:35055400-35060400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:35055400-35060800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:35055400-35061000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:35055800-35060200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr11:35056400-35062000	Enhancers	HMEC	breast
16	chr11:35056800-35060800	Enhancers	Placenta	Placenta
17	chr11:35056800-35061800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:35056800-35062000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:35056800-35062000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:35057000-35061800	Enhancers	K562	blood
21	chr11:35057800-35061200	Enhancers	GM12878-XiMat	blood
22	chr11:35058000-35062000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:35058200-35061800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr11:35058200-35063600	Weak transcription	Lung	lung
25	chr11:35058200-35065400	Weak transcription	NHLF	lung
26	chr11:35058400-35061800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:35058400-35063600	Weak transcription	Spleen	Spleen
28	chr11:35058600-35060400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:35058600-35060600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:35058600-35060800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:35058600-35061000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:35058600-35061600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:35058600-35061800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:35058600-35061800	Weak transcription	Psoas Muscle	Psoas
35	chr11:35058600-35062000	Weak transcription	HSMMtube	muscle
36	chr11:35058600-35063400	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr11:35058600-35064200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr11:35058800-35060200	Weak transcription	HSMM	muscle
39	chr11:35058800-35060400	Weak transcription	Osteobl	bone
40	chr11:35058800-35061800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr11:35058800-35062400	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr11:35058800-35064200	Weak transcription	Colon Smooth Muscle	Colon
43	chr11:35059000-35060200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:35059200-35062600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:35059400-35060200	Weak transcription	Pancreas	Pancrea
46	chr11:35059400-35063000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:35059600-35061800	Enhancers	NH-A	brain
48	chr11:35059800-35061800	Enhancers	Muscle Satellite Cultured Cells	--
49	chr11:35059800-35061800	Weak transcription	Aorta	Aorta
50	chr11:35060000-35060400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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