Variant report

Variant	rs11033637
Chromosome Location	chr11:36479789-36479790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:36477011..36480828-chr11:36482519..36484281,3	MCF-7	breast:
2	chr11:36472788..36474841-chr11:36478990..36481077,2	MCF-7	breast:
3	chr11:36477306..36479015-chr11:36479369..36482198,2	K562	blood:
4	chr11:36478697..36481136-chr11:36486249..36488109,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1123347	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1467166	0.92[CEU][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs6484858	0.87[ASW][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes]
rs7113673	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7122638	0.93[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1046452	chr11:36460958-36503079	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv518499	chr11:36466814-36479789	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11033637	CCDC73	cis	parietal	SCAN
rs11033637	TCP11L1	cis	parietal	SCAN

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36469200-36480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:36470600-36482800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:36471800-36506800	Weak transcription	Gastric	stomach
4	chr11:36471800-36506800	Weak transcription	Pancreas	Pancrea
5	chr11:36473000-36488000	Weak transcription	Liver	Liver
6	chr11:36473200-36505600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:36474200-36486800	Weak transcription	Small Intestine	intestine
8	chr11:36474400-36483800	Weak transcription	Aorta	Aorta
9	chr11:36474800-36511000	Weak transcription	Fetal Kidney	kidney
10	chr11:36475200-36486000	Strong transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:36475400-36481200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:36475400-36482200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:36475800-36480800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:36475800-36482000	Weak transcription	Thymus	Thymus
15	chr11:36476400-36485000	Strong transcription	Spleen	Spleen
16	chr11:36477200-36479800	Weak transcription	Lung	lung
17	chr11:36477600-36481600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:36477600-36482000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:36477800-36481600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:36477800-36481800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:36477800-36484600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:36477800-36485800	Strong transcription	Fetal Intestine Small	intestine
23	chr11:36477800-36488200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr11:36478000-36482000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:36478000-36485200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:36478000-36485800	Strong transcription	Fetal Intestine Large	intestine
27	chr11:36478000-36487400	Weak transcription	Esophagus	oesophagus
28	chr11:36478000-36488400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:36478000-36488800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:36478000-36489400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:36478200-36480400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:36478200-36480400	Weak transcription	Fetal Stomach	stomach
33	chr11:36478200-36481800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:36478200-36489800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:36478200-36508800	Weak transcription	Fetal Brain Female	brain
36	chr11:36478400-36481800	Weak transcription	Brain Substantia Nigra	brain
37	chr11:36478400-36481800	Weak transcription	Fetal Thymus	thymus
38	chr11:36478400-36484400	Weak transcription	NHEK	skin
39	chr11:36478400-36485600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:36478400-36485600	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr11:36478400-36486000	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr11:36478400-36488000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:36478400-36491600	Weak transcription	Brain Angular Gyrus	brain
44	chr11:36478600-36479800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:36478600-36480000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:36478600-36481800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:36478600-36483400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:36478600-36483600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr11:36478600-36484600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:36478600-36484600	Weak transcription	HSMM	muscle

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