Variant report

Variant	rs11033639
Chromosome Location	chr11:36484167-36484168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36477011..36480828-chr11:36482519..36484281,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17549494	1.00[ASW][hapmap]
rs7107490	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1046452	chr11:36460958-36503079	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36471800-36506800	Weak transcription	Gastric	stomach
2	chr11:36471800-36506800	Weak transcription	Pancreas	Pancrea
3	chr11:36473000-36488000	Weak transcription	Liver	Liver
4	chr11:36473200-36505600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:36474200-36486800	Weak transcription	Small Intestine	intestine
6	chr11:36474800-36511000	Weak transcription	Fetal Kidney	kidney
7	chr11:36475200-36486000	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:36476400-36485000	Strong transcription	Spleen	Spleen
9	chr11:36477800-36484600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:36477800-36485800	Strong transcription	Fetal Intestine Small	intestine
11	chr11:36477800-36488200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr11:36478000-36485200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:36478000-36485800	Strong transcription	Fetal Intestine Large	intestine
14	chr11:36478000-36487400	Weak transcription	Esophagus	oesophagus
15	chr11:36478000-36488400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:36478000-36488800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:36478000-36489400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:36478200-36489800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:36478200-36508800	Weak transcription	Fetal Brain Female	brain
20	chr11:36478400-36484400	Weak transcription	NHEK	skin
21	chr11:36478400-36485600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:36478400-36485600	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr11:36478400-36486000	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr11:36478400-36488000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:36478400-36491600	Weak transcription	Brain Angular Gyrus	brain
26	chr11:36478600-36484600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr11:36478600-36484600	Weak transcription	HSMM	muscle
28	chr11:36478600-36485200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:36478600-36485800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:36478600-36487600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:36478600-36488800	Weak transcription	HMEC	breast
32	chr11:36478600-36490800	Weak transcription	Right Atrium	heart
33	chr11:36478600-36506400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:36478800-36484800	Weak transcription	NHLF	lung
35	chr11:36478800-36485000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:36478800-36487200	Weak transcription	Placenta	Placenta
37	chr11:36478800-36487400	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:36478800-36488800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:36478800-36489400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr11:36478800-36489400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:36478800-36491200	Weak transcription	NHDF-Ad	bronchial
42	chr11:36478800-36491600	Weak transcription	Brain Anterior Caudate	brain
43	chr11:36478800-36492200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:36478800-36505400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr11:36478800-36510400	Weak transcription	Right Ventricle	heart
46	chr11:36478800-36512200	Weak transcription	Colon Smooth Muscle	Colon
47	chr11:36479000-36485000	Weak transcription	Osteobl	bone
48	chr11:36479400-36484400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:36480000-36484200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:36480200-36485000	Strong transcription	Colonic Mucosa	Colon

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