Variant report
| Variant | rs11033683 |
|---|---|
| Chromosome Location | chr11:36553135-36553136 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11033695 | 0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11033696 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11033698 | 0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11033699 | 0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11033703 | 0.89[EUR][1000 genomes] |
| rs11033715 | 0.93[JPT][hapmap];0.89[EUR][1000 genomes] |
| rs12225867 | 0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1356049 | 1.00[JPT][hapmap] |
| rs1399602 | 1.00[JPT][hapmap] |
| rs1515060 | 0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2133164 | 0.82[EUR][1000 genomes] |
| rs2422294 | 1.00[JPT][hapmap] |
| rs4151002 | 0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs5030414 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs5030416 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs56345614 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61877432 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61880060 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs61880061 | 0.89[EUR][1000 genomes] |
| rs7479143 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv467791 | chr11:36108497-36999385 | Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv554003 | chr11:36108497-36999385 | ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
