Variant report

Variant	rs11033789
Chromosome Location	chr11:36768565-36768566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36313572..36314458-chr11:36768376..36769407,3	K562	blood:
2	chr11:36588187..36588912-chr11:36768353..36769303,3	MCF-7	breast:
3	chr11:36531321..36532055-chr11:36768370..36769234,2	K562	blood:
4	chr11:36536866..36537854-chr11:36768352..36769212,2	MCF-7	breast:
5	chr11:36723701..36725897-chr11:36768513..36770363,2	K562	blood:
6	chr11:36585768..36586611-chr11:36768401..36769196,4	K562	blood:
7	chr11:36586002..36586650-chr11:36768339..36769255,5	MCF-7	breast:
8	chr11:36723925..36724827-chr11:36768344..36769277,7	MCF-7	breast:
9	chr11:36768324..36768860-chr16:67850405..67851033,2	MCF-7	breast:
10	chr11:36768357..36769346-chr11:36839767..36840522,2	MCF-7	breast:
11	chr11:36585718..36586807-chr11:36768335..36769499,7	MCF-7	breast:
12	chr11:36531416..36532018-chr11:36768557..36769184,2	MCF-7	breast:
13	chr11:36768499..36769405-chr7:29306639..29307162,2	MCF-7	breast:
14	chr11:36723937..36724844-chr11:36768321..36769390,6	K562	blood:
15	chr11:36588028..36588693-chr11:36768352..36768969,2	MCF-7	breast:
16	chr11:36723787..36725644-chr11:36767836..36769642,23	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11033787	1.00[AFR][1000 genomes]
rs11033788	1.00[AFR][1000 genomes]
rs12274139	1.00[AFR][1000 genomes]
rs12292307	0.86[AFR][1000 genomes]
rs28376616	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv467792	chr11:36624187-36898373	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv554005	chr11:36624187-36898373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv467793	chr11:36632515-37171833	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv554006	chr11:36632515-37171833	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1047073	chr11:36711638-36812910	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1041508	chr11:36711638-36815367	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1043391	chr11:36711638-36817144	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv554007	chr11:36711834-36825618	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv11137	chr11:36730247-36788022	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv2761663	chr11:36730335-36786817	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36766200-36769200	Enhancers	Fetal Thymus	thymus
2	chr11:36766200-36775200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:36766600-36768800	Weak transcription	Fetal Heart	heart
4	chr11:36766600-36772000	Weak transcription	Pancreas	Pancrea
5	chr11:36766600-36772800	Weak transcription	Fetal Stomach	stomach
6	chr11:36767800-36769000	Enhancers	Liver	Liver
7	chr11:36767800-36769000	Enhancers	Thymus	Thymus
8	chr11:36768200-36769200	Enhancers	Dnd41	blood
9	chr11:36768400-36768600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:36768400-36768600	Enhancers	GM12878-XiMat	blood
11	chr11:36768400-36768800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr11:36768400-36769000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:36768400-36769200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr11:36768400-36769200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr11:36768400-36769200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:36768400-36769200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:36768400-36773000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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