Variant report

Variant	rs11038527
Chromosome Location	chr11:5669109-5669110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11038529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11038536	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11038541	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11038564	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11038574	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12226121	1.00[CEU][hapmap]
rs3740997	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4910830	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4910832	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4910834	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv896939	chr11:5497799-5809548	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv1041568	chr11:5585716-5765688	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1053414	chr11:5612989-6030212	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
7	nsv553273	chr11:5639873-5871831	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5647000-5698800	Weak transcription	Colonic Mucosa	Colon
2	chr11:5647400-5669400	Weak transcription	Right Ventricle	heart
3	chr11:5647400-5675600	Weak transcription	Pancreas	Pancrea
4	chr11:5647400-5689400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:5647800-5690600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:5649200-5695600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:5655800-5674200	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:5656200-5675000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:5656400-5684600	Weak transcription	Osteobl	bone
10	chr11:5656400-5688800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:5663800-5673600	Weak transcription	Aorta	Aorta
12	chr11:5664000-5685000	Weak transcription	Fetal Thymus	thymus
13	chr11:5664000-5686200	Weak transcription	Small Intestine	intestine
14	chr11:5664000-5686200	Weak transcription	Thymus	Thymus
15	chr11:5664000-5699400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:5664200-5671600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr11:5665400-5669400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:5665400-5682600	Weak transcription	Primary T cells from cord blood	blood
19	chr11:5665400-5682600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:5665400-5685200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr11:5665400-5685400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:5665400-5685400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr11:5665400-5685400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr11:5665400-5685600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:5665400-5685600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:5665400-5685600	Weak transcription	GM12878-XiMat	blood
27	chr11:5665400-5685800	Weak transcription	Esophagus	oesophagus
28	chr11:5665400-5685800	Weak transcription	Ovary	ovary
29	chr11:5665400-5685800	Weak transcription	Spleen	Spleen
30	chr11:5665600-5672000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr11:5665600-5682800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:5665600-5682800	Weak transcription	Gastric	stomach
33	chr11:5665600-5685200	Weak transcription	Fetal Intestine Large	intestine
34	chr11:5665600-5685400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr11:5665600-5685600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr11:5665800-5675600	Weak transcription	Fetal Lung	lung
37	chr11:5666000-5684800	Weak transcription	Primary B cells from cord blood	blood
38	chr11:5666200-5673600	Weak transcription	Adipose Nuclei	Adipose
39	chr11:5666200-5682800	Weak transcription	Liver	Liver
40	chr11:5666200-5682800	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr11:5666400-5673600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:5666400-5684000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:5666400-5685000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr11:5666400-5685600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:5666400-5690800	Weak transcription	Lung	lung
46	chr11:5666400-5699400	Weak transcription	Left Ventricle	heart
47	chr11:5667000-5685600	Weak transcription	Placenta	Placenta

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