Variant report

Variant	rs11038611
Chromosome Location	chr11:45696552-45696553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10838503	0.85[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs11038595	1.00[AFR][1000 genomes]
rs11038605	0.85[CEU][hapmap];0.81[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1992849	1.00[AFR][1000 genomes]
rs2277272	0.80[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs3740702	0.80[CHD][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes]
rs3802762	0.80[CHD][hapmap];0.86[JPT][hapmap]
rs4148898	0.80[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs4148902	0.80[ASN][1000 genomes]
rs4148903	0.80[CHD][hapmap];0.86[JPT][hapmap]
rs4540819	1.00[AFR][1000 genomes]
rs4755334	0.97[ASN][1000 genomes]
rs66798082	0.96[ASN][1000 genomes]
rs72896778	1.00[AFR][1000 genomes]
rs9787901	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897313	chr11:45670395-45699134	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv467870	chr11:45684557-45757401	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv554199	chr11:45684557-45757401	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11038611	CHST1	cis	Esophagus Mucosa	GTEx
rs11038611	RP11-495O11.1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45687200-45699000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:45688000-45700600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:45693400-45699400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:45693800-45699200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:45694200-45699600	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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