Variant report

Variant	rs11038831
Chromosome Location	chr11:46266009-46266010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:34)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:46262681..46266586-chr11:46271092..46274649,4	MCF-7	breast:
2	chr11:46257890..46267047-chr11:46362753..46375455,17	K562	blood:
3	chr11:46263626..46270809-chr11:46297011..46303055,11	K562	blood:
4	chr11:46140962..46145134-chr11:46264559..46267639,5	K562	blood:
5	chr11:46264875..46267738-chr11:46329281..46332711,3	MCF-7	breast:
6	chr11:46264211..46266270-chr11:46367573..46370495,3	MCF-7	breast:
7	chr11:46148639..46152433-chr11:46264114..46268004,4	K562	blood:
8	chr11:46264082..46266416-chr7:151375101..151377352,2	MCF-7	breast:
9	chr11:46264156..46266596-chr11:46279447..46282545,3	K562	blood:
10	chr11:46263034..46268818-chr11:46367251..46371688,6	K562	blood:
11	chr11:46263532..46266439-chr11:46314699..46317339,4	MCF-7	breast:
12	chr11:46264685..46267972-chr11:46298654..46302418,5	K562	blood:
13	chr11:46264156..46266747-chr11:46279886..46281544,2	K562	blood:
14	chr11:46132224..46135042-chr11:46263015..46266575,4	K562	blood:
15	chr11:46146685..46149100-chr11:46265577..46268060,2	MCF-7	breast:
16	chr11:46263663..46266589-chr11:46322297..46324739,2	K562	blood:
17	chr11:46263737..46269397-chr11:46329982..46337819,11	K562	blood:
18	chr11:46264935..46266641-chr11:46400066..46402314,2	K562	blood:
19	chr11:46265051..46266629-chr11:46356123..46358968,2	K562	blood:
20	chr11:46260902..46266382-chr11:46328727..46335057,8	K562	blood:
21	chr11:46263412..46267230-chr11:46295489..46297894,3	K562	blood:
22	chr11:46258132..46262487-chr11:46262978..46267443,11	MCF-7	breast:
23	chr11:46263823..46266551-chr11:46357468..46359164,2	K562	blood:
24	chr11:46258381..46272821-chr11:46315090..46322037,29	K562	blood:
25	chr11:45952509..45955320-chr11:46263473..46266230,2	MCF-7	breast:
26	chr11:46136566..46145134-chr11:46256772..46268048,26	K562	blood:
27	chr11:46264430..46267699-chr11:46311283..46314197,3	K562	blood:
28	chr11:46255391..46271183-chr11:46315085..46324739,29	K562	blood:
29	chr11:46263512..46266162-chr11:46400949..46402899,2	K562	blood:
30	chr11:46141561..46146352-chr11:46263499..46266463,7	MCF-7	breast:
31	chr11:46264390..46266191-chr11:46349248..46351838,2	K562	blood:
32	chr11:45863403..45866148-chr11:46264573..46266399,2	MCF-7	breast:
33	chr11:46264754..46267699-chr11:46310847..46314197,3	K562	blood:
34	chr11:46142521..46144729-chr11:46264687..46266930,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255007	Chromatin interaction
ENSG00000254639	Chromatin interaction
ENSG00000157613	Chromatin interaction
ENSG00000110492	Chromatin interaction
ENSG00000263539	Chromatin interaction
ENSG00000135365	Chromatin interaction
ENSG00000149091	Chromatin interaction
ENSG00000254653	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10838586	0.90[ASN][1000 genomes]
rs10838589	0.90[ASN][1000 genomes]
rs11038826	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11038834	0.92[ASN][1000 genomes]
rs12223774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225704	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7128258	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051344	chr11:46188818-46306447	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv541028	chr11:46188818-46306447	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
3	nsv308	chr11:46242287-46287542	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46265400-46267000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:46265400-46267000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:46265400-46267200	Enhancers	NHDF-Ad	bronchial
4	chr11:46265400-46268600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:46265400-46268800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:46265400-46268800	Weak transcription	Placenta	Placenta
7	chr11:46265400-46268800	Weak transcription	Gastric	stomach
8	chr11:46265400-46269000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:46265400-46269000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:46265400-46269400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:46265400-46269800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:46265400-46270400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:46265400-46270400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:46265400-46270400	Weak transcription	Left Ventricle	heart
15	chr11:46265400-46273200	Weak transcription	Fetal Thymus	thymus
16	chr11:46265600-46266200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:46265600-46266200	Enhancers	Fetal Muscle Trunk	muscle
18	chr11:46265600-46266200	Enhancers	HepG2	liver
19	chr11:46265600-46266400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:46265600-46266400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:46265600-46266400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:46265600-46266400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr11:46265600-46266400	Enhancers	Dnd41	blood
24	chr11:46265600-46266400	Enhancers	HSMM	muscle
25	chr11:46265600-46266600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:46265600-46266600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr11:46265600-46266600	Enhancers	Fetal Muscle Leg	muscle
28	chr11:46265600-46266600	Enhancers	NHLF	lung
29	chr11:46265600-46267200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:46265600-46267200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:46265600-46267600	Weak transcription	Osteobl	bone
32	chr11:46265600-46268000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:46265600-46268200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:46265600-46268200	Weak transcription	Hela-S3	cervix
35	chr11:46265600-46268200	Weak transcription	HSMMtube	muscle
36	chr11:46265600-46268400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:46265600-46268400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:46265600-46268600	Weak transcription	Psoas Muscle	Psoas
39	chr11:46265600-46268600	Weak transcription	A549	lung
40	chr11:46265600-46268600	Weak transcription	HMEC	breast
41	chr11:46265600-46268600	Weak transcription	NH-A	brain
42	chr11:46265600-46269000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr11:46265600-46269000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr11:46265600-46269000	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr11:46265600-46269400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr11:46265600-46269400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:46265600-46269400	Weak transcription	Fetal Intestine Large	intestine
48	chr11:46265600-46269400	Weak transcription	Fetal Intestine Small	intestine
49	chr11:46265600-46269400	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr11:46265600-46270000	Weak transcription	GM12878-XiMat	blood

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