Variant report

Variant	rs11039038
Chromosome Location	chr11:5809990-5809991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 155 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs1032647	0.88[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap]
rs1032648	0.84[ASN][1000 genomes]
rs1032649	0.84[ASN][1000 genomes]
rs10838606	0.88[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap]
rs11038925	0.81[CHB][hapmap]
rs11038928	0.86[CHB][hapmap]
rs11038937	0.80[CHB][hapmap]
rs11038940	0.81[CHB][hapmap]
rs11038942	0.88[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap]
rs11038945	0.87[CHB][hapmap]
rs11038946	0.82[CHB][hapmap]
rs11038949	0.92[CHB][hapmap]
rs11038961	0.82[CHB][hapmap]
rs11038962	0.82[CHB][hapmap]
rs11038963	0.86[CHB][hapmap]
rs11038964	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs11038979	0.86[CHB][hapmap]
rs11039025	0.82[CHB][hapmap]
rs11039053	0.82[CHB][hapmap]
rs11039100	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs11039101	0.81[CHB][hapmap];0.92[CHD][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap];0.83[ASN][1000 genomes]
rs11039110	0.83[ASN][1000 genomes]
rs11039115	0.83[ASN][1000 genomes]
rs11039116	0.83[ASN][1000 genomes]
rs11039117	0.83[ASN][1000 genomes]
rs11039118	0.83[ASN][1000 genomes]
rs11039120	0.83[ASN][1000 genomes]
rs11039121	0.83[ASN][1000 genomes]
rs11039164	1.00[ASW][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap];0.81[ASN][1000 genomes]
rs11039168	0.93[JPT][hapmap]
rs11039170	1.00[ASW][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap]
rs11826964	0.87[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs11828490	0.80[ASN][1000 genomes]
rs12361754	0.87[CHD][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap]
rs12362071	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs12362742	0.88[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12362750	0.88[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12362906	0.82[CHB][hapmap]
rs12363178	0.88[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap]
rs12363545	0.88[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap]
rs12363725	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs12363853	0.83[ASN][1000 genomes]
rs12363855	0.87[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs12364119	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12364223	0.88[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12364265	0.88[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12364563	0.80[ASN][1000 genomes]
rs12364723	0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap]
rs12364796	1.00[ASW][hapmap];0.82[CHD][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12365487	1.00[ASW][hapmap];0.82[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.81[MEX][hapmap]
rs12365568	0.80[ASN][1000 genomes]
rs12366070	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs12786275	0.89[CEU][hapmap]
rs12791839	0.83[ASN][1000 genomes]
rs12792672	0.81[ASN][1000 genomes]
rs12792905	0.83[ASN][1000 genomes]
rs12792952	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs12793142	0.85[ASN][1000 genomes]
rs12793267	0.88[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12794769	0.82[CHB][hapmap]
rs12796660	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs12798822	0.83[ASN][1000 genomes]
rs12798823	0.83[ASN][1000 genomes]
rs1470872	0.88[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap];0.83[ASN][1000 genomes]
rs1470873	0.87[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs1498557	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2047460	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs2047461	0.84[ASN][1000 genomes]
rs2047462	0.85[ASN][1000 genomes]
rs2880343	0.82[CHB][hapmap]
rs34037040	0.84[ASN][1000 genomes]
rs34123108	0.84[ASN][1000 genomes]
rs34161300	0.83[ASN][1000 genomes]
rs34286221	0.84[ASN][1000 genomes]
rs34317277	0.84[ASN][1000 genomes]
rs34818213	0.84[ASN][1000 genomes]
rs34930440	0.83[ASN][1000 genomes]
rs35466594	0.83[ASN][1000 genomes]
rs35746872	0.83[ASN][1000 genomes]
rs35863959	0.84[ASN][1000 genomes]
rs35863965	0.83[ASN][1000 genomes]
rs35916605	0.84[ASN][1000 genomes]
rs35990969	0.83[ASN][1000 genomes]
rs4280027	0.83[ASN][1000 genomes]
rs4319539	0.83[ASN][1000 genomes]
rs4414254	0.88[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs4474469	0.83[ASN][1000 genomes]
rs5012841	0.88[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap]
rs5012842	0.80[ASN][1000 genomes]
rs5012843	0.80[ASN][1000 genomes]
rs61875861	0.80[ASN][1000 genomes]
rs61875862	0.80[ASN][1000 genomes]
rs61875914	0.83[ASN][1000 genomes]
rs61875915	0.83[ASN][1000 genomes]
rs61875921	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61875935	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs61875936	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72896130	0.84[ASN][1000 genomes]
rs968991	0.84[ASN][1000 genomes]
rs968992	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:55 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv1053414	chr11:5612989-6030212	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv553273	chr11:5639873-5871831	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv1036389	chr11:5695451-6177680	Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv540943	chr11:5695451-6177680	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
8	nsv553277	chr11:5722948-6010075	Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
9	esv1843296	chr11:5730377-5970717	Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
10	esv2758255	chr11:5730377-5970717	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
11	esv2759801	chr11:5730377-6007613	ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
12	nsv896950	chr11:5740634-5827540	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
13	nsv832058	chr11:5747594-5926814	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
14	nsv1055011	chr11:5770388-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
15	nsv896951	chr11:5773981-5832191	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
16	esv2757421	chr11:5776623-5842356	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
17	esv1806822	chr11:5778010-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv1053534	chr11:5778010-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	esv2760333	chr11:5778010-5812360	Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
20	nsv870386	chr11:5781977-5810039	Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
21	nsv869930	chr11:5781977-5818142	Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
22	nsv65	chr11:5782093-5812233	Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	nsv7654	chr11:5782093-5826200	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
24	nsv1041014	chr11:5782913-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
25	esv2760180	chr11:5782925-5816285	Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
26	nsv1048034	chr11:5783100-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
27	esv3489668	chr11:5783376-5810374	Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
28	nsv1048993	chr11:5783383-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
29	nsv1049402	chr11:5783670-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
30	esv3489671	chr11:5783826-5810224	Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
31	nsv435927	chr11:5783884-5810228	Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
32	esv1823380	chr11:5784445-5810393	Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
33	esv1816697	chr11:5784445-5819232	Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
34	esv1818059	chr11:5784445-5819778	Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
35	nsv1046530	chr11:5787393-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
36	esv3584633	chr11:5787405-5812360	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
37	nsv1053965	chr11:5788068-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
38	nsv1043847	chr11:5788068-5816285	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
39	esv3584635	chr11:5788080-5812360	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	nsv1049814	chr11:5789589-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
41	nsv1041139	chr11:5789589-5818321	Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
42	nsv1043371	chr11:5789713-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
43	nsv1037123	chr11:5789857-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
44	nsv1053616	chr11:5790800-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
45	nsv1041196	chr11:5790800-5829039	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
46	nsv1045542	chr11:5790951-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
47	nsv1038951	chr11:5793429-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
48	nsv1048309	chr11:5793429-5816174	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
49	nsv1036263	chr11:5794233-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
50	nsv1035699	chr11:5797601-5812348	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11039038	OR52A5	cis	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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