Variant report

Variant	rs11039315
Chromosome Location	chr11:47649466-47649467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47645801..47647431-chr11:47648985..47650624,2	MCF-7	breast:
2	chr11:47648151..47655137-chr11:47656071..47661932,11	K562	blood:
3	chr11:47598928..47600982-chr11:47647637..47650015,2	MCF-7	breast:
4	chr11:47648507..47652310-chr11:47658295..47660637,4	K562	blood:
5	chr11:47637426..47639040-chr11:47647295..47649989,2	MCF-7	breast:
6	chr11:47642292..47646054-chr11:47647189..47650672,3	K562	blood:

Variant related genes	Relation type
ENSG00000109919	Chromatin interaction
ENSG00000231880	Chromatin interaction
ENSG00000123444	Chromatin interaction
ENSG00000213619	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1017730	1.00[LWK][hapmap]
rs11039258	1.00[LWK][hapmap]
rs11039292	1.00[LWK][hapmap]
rs11039302	1.00[LWK][hapmap]
rs2125835	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv825872	chr11:47565425-47660330	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47630400-47649600	Weak transcription	Fetal Heart	heart
2	chr11:47636600-47661400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:47636800-47653800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:47637000-47653400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:47637600-47650800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:47637600-47653200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:47637600-47653200	Strong transcription	Liver	Liver
8	chr11:47637600-47657200	Strong transcription	Primary B cells from peripheral blood	blood
9	chr11:47637600-47660800	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:47637600-47661200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:47637600-47663200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:47637800-47653200	Strong transcription	Left Ventricle	heart
13	chr11:47637800-47660400	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:47637800-47661000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:47637800-47661000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:47638000-47661400	Strong transcription	Fetal Thymus	thymus
17	chr11:47638000-47661800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:47638200-47652800	Strong transcription	Hela-S3	cervix
19	chr11:47638200-47661200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr11:47638200-47661200	Strong transcription	Stomach Smooth Muscle	stomach
21	chr11:47638200-47661600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:47638200-47661600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:47638400-47653400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr11:47638400-47653800	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr11:47638400-47654000	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:47638400-47660400	Strong transcription	Dnd41	blood
27	chr11:47638400-47661200	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:47638600-47653600	Strong transcription	Primary B cells from cord blood	blood
29	chr11:47638600-47654000	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr11:47638600-47657200	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:47638800-47661600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:47639000-47651400	Strong transcription	K562	blood
33	chr11:47639000-47658000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr11:47639000-47661200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:47639000-47661400	Strong transcription	Fetal Muscle Leg	muscle
36	chr11:47639000-47662600	Weak transcription	Stomach Mucosa	stomach
37	chr11:47639200-47653800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr11:47639200-47657600	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr11:47639400-47655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:47639600-47661200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr11:47639800-47657600	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:47640000-47653800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:47640000-47661000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:47640200-47652400	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:47640200-47661200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:47640200-47661200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:47640200-47661200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:47640400-47651200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:47640400-47653800	Strong transcription	Fetal Brain Female	brain
50	chr11:47640600-47651200	Strong transcription	Brain Germinal Matrix	brain

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