Variant report

Variant	rs11041734
Chromosome Location	chr11:8105073-8105074
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11041733	0.83[CHB][hapmap]
rs4385931	0.83[CEU][hapmap]
rs4578424	0.82[MKK][hapmap];0.84[TSI][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11041734	OR10A3	cis	parietal	SCAN
rs11041734	SBF2	cis	parietal	SCAN
rs11041734	OR5P2	cis	cerebellum	SCAN

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8103000-8105600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:8103000-8108200	Enhancers	Fetal Heart	heart
3	chr11:8103200-8105800	Flanking Active TSS	Brain Germinal Matrix	brain
4	chr11:8103400-8105800	Flanking Active TSS	Fetal Brain Female	brain
5	chr11:8103600-8105400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr11:8103600-8105600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:8103600-8107200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:8103600-8109000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:8103600-8109000	Enhancers	Left Ventricle	heart
10	chr11:8103600-8109600	Enhancers	Right Atrium	heart
11	chr11:8103600-8109600	Enhancers	Right Ventricle	heart
12	chr11:8103600-8115600	Weak transcription	Aorta	Aorta
13	chr11:8103800-8105400	Enhancers	Fetal Kidney	kidney
14	chr11:8103800-8105400	Enhancers	Ovary	ovary
15	chr11:8103800-8105600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:8103800-8105800	Enhancers	HepG2	liver
17	chr11:8103800-8106800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:8103800-8108400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:8103800-8119600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:8104000-8105400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr11:8104000-8105600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr11:8104000-8105800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:8104000-8105800	Enhancers	Fetal Lung	lung
24	chr11:8104000-8111400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:8104200-8105200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:8104200-8105400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr11:8104200-8105400	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr11:8104200-8105600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:8104200-8105600	Genic enhancers	Fetal Stomach	stomach
30	chr11:8104200-8105800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:8104200-8106600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr11:8104200-8120000	Weak transcription	HSMM	muscle
33	chr11:8104400-8105200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
34	chr11:8104400-8105200	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
35	chr11:8104400-8105400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:8104400-8105400	Flanking Active TSS	Brain Angular Gyrus	brain
37	chr11:8104400-8105400	Bivalent Enhancer	Placenta	Placenta
38	chr11:8104400-8105600	Bivalent Enhancer	Brain Substantia Nigra	brain
39	chr11:8104400-8105800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:8104400-8106600	Weak transcription	Spleen	Spleen
41	chr11:8104400-8108800	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr11:8104400-8109800	Enhancers	Fetal Muscle Leg	muscle
43	chr11:8104400-8114000	Weak transcription	Osteobl	bone
44	chr11:8104600-8105200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:8104600-8105600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:8104600-8105600	Enhancers	Adipose Nuclei	Adipose
47	chr11:8104600-8105800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:8104600-8106800	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr11:8104600-8107800	Weak transcription	Colon Smooth Muscle	Colon
50	chr11:8104600-8108200	Enhancers	Fetal Brain Male	brain

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