Variant report

Variant	rs11041738
Chromosome Location	chr11:8114103-8114104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8074268..8076681-chr11:8112066..8114315,2	K562	blood:
2	chr11:8051850..8054508-chr11:8112523..8114559,2	K562	blood:
3	chr11:8027630..8028590-chr11:8113864..8114843,6	MCF-7	breast:
4	chr11:8016616..8019167-chr11:8111283..8114167,2	MCF-7	breast:
5	chr11:8054438..8054991-chr11:8113935..8114446,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1881230	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs2272382	0.81[CHB][hapmap]
rs4575312	0.89[CEU][hapmap]
rs4578424	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11041738	OR10A3	cis	parietal	SCAN
rs11041738	OR52B6	cis	parietal	SCAN

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8103600-8115600	Weak transcription	Aorta	Aorta
2	chr11:8103800-8119600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:8104200-8120000	Weak transcription	HSMM	muscle
4	chr11:8104800-8114200	Weak transcription	Esophagus	oesophagus
5	chr11:8105400-8118000	Weak transcription	Fetal Kidney	kidney
6	chr11:8105400-8122000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:8105600-8114200	Weak transcription	Adipose Nuclei	Adipose
8	chr11:8105800-8127400	Weak transcription	HepG2	liver
9	chr11:8106800-8122400	Weak transcription	Spleen	Spleen
10	chr11:8107200-8118000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:8108000-8114200	Weak transcription	Pancreas	Pancrea
12	chr11:8108000-8115400	Weak transcription	Ovary	ovary
13	chr11:8108000-8116000	Weak transcription	NHLF	lung
14	chr11:8108000-8117000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:8108200-8114200	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:8108200-8115400	Weak transcription	Fetal Brain Female	brain
17	chr11:8108200-8115600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:8108400-8118200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:8108600-8115000	Weak transcription	Brain Germinal Matrix	brain
20	chr11:8108600-8116400	Weak transcription	Fetal Brain Male	brain
21	chr11:8108600-8117000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:8108600-8118000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:8108800-8114600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:8108800-8115600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:8108800-8115600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:8108800-8115800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr11:8108800-8115800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:8108800-8116200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:8108800-8117800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:8108800-8118200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:8109000-8125400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:8109600-8114200	Weak transcription	Brain Substantia Nigra	brain
33	chr11:8109600-8114600	Weak transcription	Right Atrium	heart
34	chr11:8110200-8114200	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:8110800-8114400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:8111600-8114200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:8111600-8115800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:8112200-8117200	Strong transcription	Fetal Lung	lung
39	chr11:8112400-8114200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr11:8112400-8115800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr11:8112400-8119800	Weak transcription	NHEK	skin
42	chr11:8112600-8129800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:8112800-8116800	Strong transcription	A549	lung
44	chr11:8113200-8114200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:8113200-8114800	Enhancers	Left Ventricle	heart
46	chr11:8113200-8116600	Enhancers	Fetal Intestine Large	intestine
47	chr11:8113200-8117200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:8113200-8128600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:8113400-8114200	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:8113600-8114400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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