Variant report

Variant	rs11041740
Chromosome Location	chr11:8117518-8117519
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8114581..8116309-chr11:8116337..8119171,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2242501	0.90[TSI][hapmap]
rs2242502	0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11041740	ST5	cis	parietal	SCAN
rs11041740	RRP8	cis	cerebellum	SCAN
rs11041740	OR10A3	cis	parietal	SCAN
rs11041740	OR52B6	cis	parietal	SCAN
rs11041740	OR10A5	cis	parietal	SCAN
rs11041740	CCKBR	cis	parietal	SCAN

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8103800-8119600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:8104200-8120000	Weak transcription	HSMM	muscle
3	chr11:8105400-8118000	Weak transcription	Fetal Kidney	kidney
4	chr11:8105400-8122000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:8105800-8127400	Weak transcription	HepG2	liver
6	chr11:8106800-8122400	Weak transcription	Spleen	Spleen
7	chr11:8107200-8118000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:8108400-8118200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:8108600-8118000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:8108800-8117800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:8108800-8118200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:8109000-8125400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:8112400-8119800	Weak transcription	NHEK	skin
14	chr11:8112600-8129800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:8113200-8128600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:8113600-8117800	Genic enhancers	Fetal Intestine Small	intestine
17	chr11:8114200-8122200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:8114400-8124000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr11:8114400-8125600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:8114400-8125800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:8114400-8128200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr11:8114400-8130000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:8114400-8133600	Weak transcription	Liver	Liver
24	chr11:8114600-8118200	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:8114600-8119800	Weak transcription	NH-A	brain
26	chr11:8114600-8126800	Weak transcription	Fetal Heart	heart
27	chr11:8114800-8119400	Weak transcription	Left Ventricle	heart
28	chr11:8114800-8119400	Weak transcription	NHDF-Ad	bronchial
29	chr11:8114800-8122600	Weak transcription	Esophagus	oesophagus
30	chr11:8114800-8122600	Weak transcription	Pancreas	Pancrea
31	chr11:8114800-8124600	Weak transcription	Small Intestine	intestine
32	chr11:8115000-8118200	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:8115200-8119600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:8115200-8128800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:8115400-8117800	Weak transcription	Brain Angular Gyrus	brain
36	chr11:8115400-8118000	Enhancers	Placenta	Placenta
37	chr11:8115400-8119400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:8115400-8129400	Strong transcription	Ovary	ovary
39	chr11:8115600-8119400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:8115600-8119600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:8115600-8121000	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:8115800-8118600	Strong transcription	Brain Substantia Nigra	brain
43	chr11:8115800-8128800	Strong transcription	Stomach Smooth Muscle	stomach
44	chr11:8115800-8129400	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr11:8116000-8122800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:8116000-8124600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr11:8116200-8117600	Weak transcription	Brain Germinal Matrix	brain
48	chr11:8116200-8118200	Weak transcription	Aorta	Aorta
49	chr11:8116200-8125600	Weak transcription	Colonic Mucosa	Colon
50	chr11:8116200-8132000	Weak transcription	Duodenum Mucosa	Duodenum

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