Variant report

Variant	rs11041770
Chromosome Location	chr11:8175282-8175283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11041744	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041745	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041748	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041750	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041751	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041753	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041755	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11041760	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041762	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360649	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12362369	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363594	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17847552	0.91[ASN][1000 genomes]
rs17847553	0.91[ASN][1000 genomes]
rs17847554	0.91[ASN][1000 genomes]
rs2242504	1.00[CHB][hapmap]
rs4758302	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs56740207	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58706265	0.91[ASN][1000 genomes]
rs59934287	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409635	0.83[ASN][1000 genomes]
rs73409661	0.96[ASN][1000 genomes]
rs73411617	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411659	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948279	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1048537	chr11:8137353-8196203	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv896981	chr11:8152080-8227964	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8149800-8179600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:8156000-8189800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:8160800-8188600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:8162000-8189400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:8162400-8183200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:8169800-8178600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:8171800-8177400	Weak transcription	Psoas Muscle	Psoas
8	chr11:8173800-8175800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:8173800-8177400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:8174200-8177400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:8174600-8175400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:8174800-8175400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr11:8174800-8175600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr11:8175000-8175400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:8175000-8175600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:8175200-8175600	Enhancers	H1 Cell Line	embryonic stem cell

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