Variant report

Variant	rs11041782
Chromosome Location	chr11:8194926-8194927
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:8194780-8194930	HCT-116	colon:	n/a	n/a
2	CTCF	chr11:8194800-8194950	HepG2	liver:	n/a	n/a
3	CTCF	chr11:8194780-8194930	GM12867	blood:	n/a	n/a
4	CTCF	chr11:8194800-8194950	NHEK	skin:	n/a	n/a
5	CTCF	chr11:8194780-8194930	SK-N-SH_RA	brain:	n/a	n/a
6	CTCF	chr11:8194820-8194970	GM12872	blood:	n/a	n/a

Variant related genes	Relation type
RIC3	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10743053	0.85[ASN][1000 genomes]
rs10743054	0.85[ASN][1000 genomes]
rs10743055	0.85[ASN][1000 genomes]
rs10769882	0.96[ASN][1000 genomes]
rs10769883	0.85[ASN][1000 genomes]
rs10839994	0.91[ASN][1000 genomes]
rs10839995	0.92[ASN][1000 genomes]
rs11041788	0.93[ASN][1000 genomes]
rs1528124	0.96[ASN][1000 genomes]
rs1528125	0.85[ASN][1000 genomes]
rs1970880	0.85[ASN][1000 genomes]
rs1997262	0.85[ASN][1000 genomes]
rs34809738	0.93[ASN][1000 genomes]
rs35671424	0.85[ASN][1000 genomes]
rs55752700	0.85[ASN][1000 genomes]
rs61527420	0.85[ASN][1000 genomes]
rs7103334	0.85[ASN][1000 genomes]
rs7122882	0.96[ASN][1000 genomes]
rs7127738	0.85[ASN][1000 genomes]
rs7479133	0.85[ASN][1000 genomes]
rs7479156	0.85[ASN][1000 genomes]
rs7479738	0.85[ASN][1000 genomes]
rs7481667	0.85[ASN][1000 genomes]
rs7481683	0.85[ASN][1000 genomes]
rs7481742	0.85[ASN][1000 genomes]
rs7481907	0.85[ASN][1000 genomes]
rs7939157	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1048537	chr11:8137353-8196203	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv896981	chr11:8152080-8227964	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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