Variant report

Variant	rs11042003
Chromosome Location	chr11:8619129-8619130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11041996	0.92[ASN][1000 genomes]
rs11042000	0.93[ASN][1000 genomes]
rs11042006	1.00[ASN][1000 genomes]
rs12224243	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8616200-8619200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:8616600-8625600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:8617000-8625400	Weak transcription	GM12878-XiMat	blood
4	chr11:8618200-8619400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:8618200-8619600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:8618400-8619200	Enhancers	Stomach Mucosa	stomach
7	chr11:8618400-8619200	Enhancers	Osteobl	bone
8	chr11:8618400-8623000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:8618600-8619200	Bivalent Enhancer	NHDF-Ad	bronchial
10	chr11:8618800-8619200	Enhancers	Duodenum Mucosa	Duodenum
11	chr11:8619000-8619200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr11:8619000-8619200	Enhancers	NHLF	lung
13	chr11:8619000-8622800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:8619000-8623000	Weak transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links