Variant report

Variant	rs11043276
Chromosome Location	chr12:122406752-122406753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:122399290..122403037-chr12:122405786..122408622,3	K562	blood:
2	chr12:122396876..122400542-chr12:122404615..122407753,3	MCF-7	breast:
3	chr12:122406389..122408558-chr12:122412146..122414620,2	MCF-7	breast:
4	chr12:122406493..122409216-chr12:122458778..122460329,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158023	Chromatin interaction
ENSG00000110987	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10431199	1.00[MEX][hapmap]
rs10840635	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11043229	1.00[MEX][hapmap]
rs11043245	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11043247	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11043249	0.81[JPT][hapmap]
rs11043252	0.81[JPT][hapmap]
rs11043265	1.00[ASW][hapmap];0.83[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[MKK][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11043269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11043285	1.00[MEX][hapmap]
rs1523261	0.83[ASN][1000 genomes]
rs4069668	1.00[MEX][hapmap]
rs56304060	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57161524	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6486783	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6486784	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6486785	0.81[JPT][hapmap]
rs7134726	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7139277	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7298520	0.81[JPT][hapmap]
rs7300379	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7314835	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7314989	0.89[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.90[MKK][hapmap]
rs7954584	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	nsv916686	chr12:122240149-122714056	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv899568	chr12:122254713-122456524	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv34001	chr12:122298737-122521637	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122363600-122408000	Weak transcription	Right Ventricle	heart
2	chr12:122375800-122415800	Weak transcription	Liver	Liver
3	chr12:122376000-122413000	Weak transcription	Aorta	Aorta
4	chr12:122391400-122410800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:122391800-122410800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:122394000-122429800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr12:122394200-122407600	Weak transcription	Brain Angular Gyrus	brain
8	chr12:122394200-122411000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr12:122394200-122411200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr12:122396000-122408000	Weak transcription	Fetal Intestine Small	intestine
11	chr12:122396600-122408200	Weak transcription	Fetal Brain Female	brain
12	chr12:122396600-122439200	Weak transcription	Brain Anterior Caudate	brain
13	chr12:122396800-122410800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr12:122397200-122408400	Weak transcription	Brain Substantia Nigra	brain
15	chr12:122399000-122411000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr12:122399000-122411000	Weak transcription	Gastric	stomach
17	chr12:122400200-122408200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr12:122401400-122408200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr12:122402000-122408800	Weak transcription	Pancreas	Pancrea
20	chr12:122402000-122412400	Weak transcription	Ovary	ovary
21	chr12:122402000-122412800	Weak transcription	Spleen	Spleen
22	chr12:122402800-122407200	Weak transcription	Placenta	Placenta
23	chr12:122403000-122408400	Weak transcription	NH-A	brain
24	chr12:122403400-122406800	Weak transcription	Fetal Lung	lung
25	chr12:122403400-122407600	Weak transcription	A549	lung
26	chr12:122403400-122410800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr12:122403400-122411000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr12:122403400-122417200	Weak transcription	NHDF-Ad	bronchial
29	chr12:122403600-122407800	Weak transcription	HUVEC	blood vessel
30	chr12:122403600-122408200	Weak transcription	Fetal Kidney	kidney
31	chr12:122403800-122412400	Weak transcription	HSMM	muscle
32	chr12:122403800-122412600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr12:122404000-122410000	Weak transcription	HMEC	breast
34	chr12:122404000-122410800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr12:122404000-122412400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr12:122404600-122409800	Strong transcription	NHEK	skin
37	chr12:122404800-122408600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr12:122404800-122409800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr12:122404800-122410000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr12:122404800-122410000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr12:122404800-122410000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr12:122404800-122411000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr12:122405000-122408200	Strong transcription	Placenta Amnion	Placenta Amnion
44	chr12:122405000-122409800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr12:122405200-122407000	Strong transcription	HSMMtube	muscle
46	chr12:122405200-122407200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr12:122405200-122407400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr12:122405200-122409800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr12:122405200-122412400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr12:122405400-122408400	Weak transcription	Fetal Heart	heart

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