Variant report

Variant	rs11045256
Chromosome Location	chr12:20606540-20606541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr12:20606537-20606703	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
UBE2L2	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10841528	0.90[MEX][hapmap]
rs10841529	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10841550	0.83[EUR][1000 genomes]
rs10841551	0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs11045253	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11045257	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11045259	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11045260	1.00[CHB][hapmap]
rs11045265	1.00[CHB][hapmap]
rs11045279	0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs11611895	0.87[AMR][1000 genomes]
rs11611929	0.87[AMR][1000 genomes]
rs12184495	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12372360	0.83[EUR][1000 genomes]
rs12815826	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4130514	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4762759	0.83[GIH][hapmap];0.86[MEX][hapmap]
rs6487091	1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7302508	0.95[CEU][hapmap];0.90[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7484431	0.95[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7485624	0.87[LWK][hapmap]
rs7978217	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048067	chr12:20363755-20874845	Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv541408	chr12:20363755-20874845	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1046870	chr12:20509914-20711535	Active TSS Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
4	nsv541409	chr12:20509914-20711535	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
5	nsv1042315	chr12:20531641-20629866	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20588200-20618400	Weak transcription	Ovary	ovary
2	chr12:20599000-20609600	Weak transcription	Fetal Muscle Leg	muscle
3	chr12:20599600-20613800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr12:20601000-20606800	Weak transcription	Right Ventricle	heart
5	chr12:20602000-20607600	Weak transcription	Fetal Kidney	kidney
6	chr12:20602000-20609000	Enhancers	Fetal Intestine Large	intestine
7	chr12:20602800-20610000	Enhancers	Fetal Intestine Small	intestine
8	chr12:20603800-20608000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr12:20604000-20608000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr12:20604400-20621600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr12:20604800-20607400	Genic enhancers	Hela-S3	cervix
12	chr12:20605000-20613000	Weak transcription	Aorta	Aorta
13	chr12:20605200-20606600	Weak transcription	NHDF-Ad	bronchial
14	chr12:20605200-20606800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr12:20605200-20608200	Weak transcription	Fetal Heart	heart
16	chr12:20605400-20608200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr12:20605800-20606800	Weak transcription	Osteobl	bone
18	chr12:20605800-20611400	Weak transcription	Small Intestine	intestine
19	chr12:20606000-20607600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr12:20606000-20608200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr12:20606000-20612800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr12:20606000-20616600	Weak transcription	A549	lung
23	chr12:20606200-20609400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr12:20606400-20612800	Weak transcription	Left Ventricle	heart

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