Variant report

Variant	rs11045950
Chromosome Location	chr12:21452802-21452803
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10770795	0.82[EUR][1000 genomes]
rs10841795	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11045916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11045917	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11045918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11045928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11045942	0.99[EUR][1000 genomes]
rs11045946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11045952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11045953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11045956	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11045957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11045958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11045960	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11045961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11045962	0.80[EUR][1000 genomes]
rs11045972	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11045978	0.99[EUR][1000 genomes]
rs11045981	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12367829	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12368481	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12820529	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12821721	0.99[EUR][1000 genomes]
rs2199684	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2199686	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28802276	0.99[EUR][1000 genomes]
rs2900480	0.99[EUR][1000 genomes]
rs34022980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34211424	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35736956	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35901590	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3794319	0.80[EUR][1000 genomes]
rs3794320	0.99[EUR][1000 genomes]
rs4149002	0.80[EUR][1000 genomes]
rs4149006	0.80[EUR][1000 genomes]
rs4337089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4442593	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55720923	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55820200	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6487215	0.99[EUR][1000 genomes]
rs66777941	0.99[EUR][1000 genomes]
rs71446763	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7965059	0.99[EUR][1000 genomes]
rs7967303	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7967403	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7978322	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898891	chr12:21422253-21453355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv898892	chr12:21428371-21453355	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv898893	chr12:21444883-21453355	Strong transcription Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv557736	chr12:21446936-21453466	ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21411000-21460400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr12:21416200-21473600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:21426600-21460400	Weak transcription	Brain Anterior Caudate	brain
4	chr12:21447600-21460600	Weak transcription	Brain Substantia Nigra	brain
5	chr12:21449200-21453200	Weak transcription	Liver	Liver
6	chr12:21450800-21460600	Weak transcription	Brain Hippocampus Middle	brain
7	chr12:21451400-21460600	Weak transcription	Brain Angular Gyrus	brain

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