Variant report

Variant	rs11048371
Chromosome Location	chr12:26155800-26155801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11048376	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26139600-26160000	Weak transcription	Pancreas	Pancrea
2	chr12:26145600-26163000	Weak transcription	Fetal Muscle Leg	muscle
3	chr12:26146200-26163000	Weak transcription	Lung	lung
4	chr12:26148000-26163600	Weak transcription	Aorta	Aorta
5	chr12:26148200-26157000	Weak transcription	Psoas Muscle	Psoas
6	chr12:26150800-26159600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:26150800-26160000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr12:26150800-26163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:26151000-26155800	Weak transcription	Fetal Heart	heart
10	chr12:26151000-26163000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr12:26151200-26156000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr12:26151200-26156000	Weak transcription	Brain Anterior Caudate	brain
13	chr12:26151200-26160000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr12:26151400-26156000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr12:26151400-26160400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr12:26151400-26162000	Weak transcription	Hela-S3	cervix
17	chr12:26152200-26156000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr12:26152200-26162800	Weak transcription	HSMM	muscle
19	chr12:26152600-26156200	Weak transcription	Osteobl	bone
20	chr12:26152800-26157400	Strong transcription	NHDF-Ad	bronchial
21	chr12:26153200-26156000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr12:26153800-26156000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr12:26154400-26156600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr12:26154600-26155800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr12:26154600-26156600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr12:26154800-26156400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr12:26154800-26156400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:26154800-26157400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr12:26154800-26157800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr12:26154800-26163400	Weak transcription	HSMMtube	muscle
31	chr12:26155000-26159400	Weak transcription	Colon Smooth Muscle	Colon
32	chr12:26155600-26155800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr12:26155600-26155800	ZNF genes & repeats	HUVEC	blood vessel
34	chr12:26155600-26156000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr12:26155600-26156000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
36	chr12:26155600-26156200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
37	chr12:26155600-26156200	ZNF genes & repeats	Fetal Lung	lung
38	chr12:26155600-26156400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr12:26155600-26156400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
40	chr12:26155600-26156400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
41	chr12:26155600-26156400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
42	chr12:26155600-26156400	ZNF genes & repeats	Ovary	ovary
43	chr12:26155600-26156400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
44	chr12:26155600-26156600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr12:26155600-26156600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr12:26155600-26156600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
47	chr12:26155600-26156600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr12:26155600-26156600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr12:26155600-26156600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
50	chr12:26155600-26156600	ZNF genes & repeats	NH-A	brain

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