Variant report

Variant	rs11050660
Chromosome Location	chr12:30262798-30262799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10219620	0.96[ASN][1000 genomes]
rs11050623	1.00[AMR][1000 genomes]
rs11050628	1.00[AMR][1000 genomes]
rs11050635	1.00[AMR][1000 genomes]
rs11050636	1.00[AMR][1000 genomes]
rs11050650	1.00[AMR][1000 genomes]
rs11050651	1.00[AMR][1000 genomes]
rs11050657	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11050658	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11050661	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11533434	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12578582	1.00[AMR][1000 genomes]
rs1319488	1.00[AMR][1000 genomes]
rs16935372	1.00[AMR][1000 genomes]
rs16935387	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1994278	0.84[ASN][1000 genomes]
rs4931258	0.87[ASN][1000 genomes]
rs4931259	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948495	chr12:30090771-30344772	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1042081	chr12:30147993-30344670	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541436	chr12:30147993-30344670	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30259400-30263800	Weak transcription	HUVEC	blood vessel
2	chr12:30259800-30263400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:30261200-30263600	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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