Variant report

Variant	rs11050931
Chromosome Location	chr12:30659220-30659221
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10743722	0.88[ASN][1000 genomes]
rs10771739	0.87[ASN][1000 genomes]
rs11050933	0.84[ASN][1000 genomes]
rs11050936	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12368517	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1385343	0.87[ASN][1000 genomes]
rs1385344	0.87[ASN][1000 genomes]
rs1872364	0.86[ASN][1000 genomes]
rs1872365	0.86[ASN][1000 genomes]
rs4539409	0.88[ASN][1000 genomes]
rs4930930	0.88[ASN][1000 genomes]
rs58793533	0.87[ASN][1000 genomes]
rs7296344	0.98[ASN][1000 genomes]
rs7300271	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1050233	chr12:30590071-30670919	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30657800-30661800	Enhancers	HepG2	liver
2	chr12:30658400-30661400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr12:30659000-30659800	Flanking Active TSS	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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