Variant report

Variant	rs11050995
Chromosome Location	chr12:30765862-30765863
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:30763835..30765462-chr12:30765770..30767288,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10431223	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11050960	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11050962	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11050963	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050964	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050965	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050966	0.88[ASN][1000 genomes]
rs11050967	0.84[ASN][1000 genomes]
rs11050974	0.91[ASN][1000 genomes]
rs11050975	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050976	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050978	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050979	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050980	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050981	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050982	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050996	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050997	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050998	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050999	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11051000	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11051001	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11051004	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11051011	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11051014	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11051016	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11051017	0.84[ASN][1000 genomes]
rs11051021	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11051024	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11051025	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11051031	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11051032	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11051036	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11051039	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs11051040	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs11051043	0.84[EUR][1000 genomes]
rs11051064	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs11051067	0.92[EUR][1000 genomes]
rs11051074	0.92[EUR][1000 genomes]
rs11531057	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11534760	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11561156	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1157125	0.92[EUR][1000 genomes]
rs11613738	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs12228212	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12229358	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12229986	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs12230006	0.84[EUR][1000 genomes]
rs12230490	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12231670	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1659284	0.84[ASN][1000 genomes]
rs16906574	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16906582	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16906596	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16906601	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16906606	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16906713	0.84[EUR][1000 genomes]
rs16906758	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs16916147	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2114900	0.92[EUR][1000 genomes]
rs3850958	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3850959	0.83[ASN][1000 genomes]
rs3889761	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3898255	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57735299	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57918172	0.82[ASN][1000 genomes]
rs60712960	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7970293	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7977562	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30764800-30766000	Weak transcription	Placenta	Placenta
2	chr12:30765600-30767000	Enhancers	HUVEC	blood vessel
3	chr12:30765600-30767600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:30765800-30766800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:30765800-30767200	Enhancers	HepG2	liver

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