Variant report
| Variant | rs11051065 |
|---|---|
| Chromosome Location | chr12:30919149-30919150 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs11608803 | 1.00[CHB][hapmap] |
| rs12314492 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1485346 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1560019 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17486840 | 1.00[CHB][hapmap] |
| rs17687472 | 1.00[CHB][hapmap] |
| rs17687846 | 1.00[CHB][hapmap] |
| rs17688437 | 1.00[CHB][hapmap] |
| rs17739338 | 1.00[CHB][hapmap] |
| rs2099029 | 1.00[CHB][hapmap] |
| rs7300410 | 1.00[CHB][hapmap] |
| rs73082005 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs73082008 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73082068 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3343291 | chr12:30455597-30992837 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 2 | nsv832361 | chr12:30794030-30997241 | Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| 3 | nsv949148 | chr12:30800040-31131712 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
| 4 | esv3371244 | chr12:30916285-30920583 | Enhancers Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:30918200-30924200 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
