Variant report

Variant	rs11051394
Chromosome Location	chr12:31493435-31493436
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:31476826..31478738-chr12:31492842..31495703,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177340	Chromatin interaction
ENSG00000139146	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10843918	1.00[EUR][1000 genomes]
rs11051386	1.00[ASW][hapmap]
rs11051395	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11051396	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051399	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11051402	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11051403	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11051409	0.94[CHB][hapmap];1.00[EUR][1000 genomes]
rs12226982	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12228674	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12581740	1.00[EUR][1000 genomes]
rs17576073	1.00[EUR][1000 genomes]
rs17576094	1.00[EUR][1000 genomes]
rs17576143	1.00[EUR][1000 genomes]
rs17603906	1.00[EUR][1000 genomes]
rs2293039	1.00[EUR][1000 genomes]
rs2293040	1.00[EUR][1000 genomes]
rs3741872	1.00[EUR][1000 genomes]
rs3741873	1.00[EUR][1000 genomes]
rs3782688	1.00[EUR][1000 genomes]
rs57061710	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60022875	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7301494	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041877	chr12:31009451-31809254	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv541440	chr12:31009451-31809254	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv2751043	chr12:31148662-31499671	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	esv2751046	chr12:31174233-31684733	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2754121	chr12:31225710-31493435	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	esv2751054	chr12:31225710-31513718	Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	esv2751071	chr12:31239600-31493435	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	esv2751072	chr12:31239600-31499671	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv430477	chr12:31239600-31513718	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	esv2751077	chr12:31278031-31499671	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
11	nsv832364	chr12:31467990-31648144	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31480000-31522800	Weak transcription	Right Atrium	heart
2	chr12:31491200-31493600	Enhancers	Fetal Intestine Large	intestine
3	chr12:31491800-31499800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:31492200-31494400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:31492600-31493600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:31492800-31493600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr12:31492800-31493600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr12:31492800-31493600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr12:31493200-31493600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr12:31493200-31493600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr12:31493200-31493600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr12:31493200-31493600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr12:31493200-31493800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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