Variant report

Variant	rs11051456
Chromosome Location	chr12:31700912-31700913
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1150942	0.88[ASN][1000 genomes]
rs1150943	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1150945	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1150954	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1150955	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1150963	0.88[ASN][1000 genomes]
rs1259233	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1259241	0.88[ASN][1000 genomes]
rs1259353	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1259354	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1259356	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1259359	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1259386	0.87[ASN][1000 genomes]
rs1259389	0.81[ASN][1000 genomes]
rs1259395	0.84[EUR][1000 genomes]
rs1259405	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1259426	0.85[ASN][1000 genomes]
rs1259435	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1259437	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1259438	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1259441	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1262390	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1272773	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1677186	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1677187	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2061761	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2374190	0.90[AMR][1000 genomes]
rs2568887	0.83[ASN][1000 genomes]
rs2604052	0.87[ASN][1000 genomes]
rs2617178	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2617191	0.82[ASN][1000 genomes]
rs2682671	0.83[ASN][1000 genomes]
rs2682674	0.82[ASN][1000 genomes]
rs2682677	0.82[ASN][1000 genomes]
rs2682679	0.82[ASN][1000 genomes]
rs2682695	0.83[ASN][1000 genomes]
rs793148	0.83[ASN][1000 genomes]
rs793149	0.83[ASN][1000 genomes]
rs793173	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs793174	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs793175	0.85[ASN][1000 genomes]
rs793177	0.88[ASN][1000 genomes]
rs793186	0.82[ASN][1000 genomes]
rs7974437	0.89[AFR][1000 genomes]
rs899159	0.87[ASN][1000 genomes]
rs976874	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041877	chr12:31009451-31809254	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv541440	chr12:31009451-31809254	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv1836923	chr12:31539122-31761172	Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2760267	chr12:31626732-31909908	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv898965	chr12:31631819-31771689	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv832365	chr12:31642811-31808532	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	esv1842653	chr12:31670378-31744033	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31685400-31708600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:31689000-31713000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr12:31694400-31707400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:31696200-31701800	Weak transcription	Ovary	ovary
5	chr12:31696200-31722400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:31700200-31701800	Weak transcription	A549	lung

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