Variant report

Variant	rs11051491
Chromosome Location	chr12:31778769-31778770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10771860	0.83[ASN][1000 genomes]
rs10843975	0.90[ASN][1000 genomes]
rs10843977	0.81[ASN][1000 genomes]
rs10843980	0.82[ASN][1000 genomes]
rs10843981	0.82[ASN][1000 genomes]
rs10843984	0.82[ASN][1000 genomes]
rs12366487	0.82[ASN][1000 genomes]
rs12368226	0.83[ASN][1000 genomes]
rs12370374	0.90[ASN][1000 genomes]
rs2374165	0.81[ASN][1000 genomes]
rs2374168	0.83[ASN][1000 genomes]
rs2374170	0.88[ASN][1000 genomes]
rs2888753	0.83[ASN][1000 genomes]
rs2888754	0.83[ASN][1000 genomes]
rs34229621	0.80[EUR][1000 genomes]
rs34312039	0.82[ASN][1000 genomes]
rs3844104	0.81[ASN][1000 genomes]
rs3850970	0.84[ASN][1000 genomes]
rs3850971	0.85[ASN][1000 genomes]
rs3908176	0.84[ASN][1000 genomes]
rs3908177	0.81[ASN][1000 genomes]
rs4600301	0.80[ASN][1000 genomes]
rs4931533	0.83[ASN][1000 genomes]
rs4999141	0.81[ASN][1000 genomes]
rs57741885	0.83[ASN][1000 genomes]
rs7959945	0.81[ASN][1000 genomes]
rs7962168	0.83[ASN][1000 genomes]
rs7967222	0.80[ASN][1000 genomes]
rs7974004	0.80[ASN][1000 genomes]
rs7974863	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041877	chr12:31009451-31809254	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv541440	chr12:31009451-31809254	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv2760267	chr12:31626732-31909908	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv832365	chr12:31642811-31808532	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31773600-31782600	Weak transcription	A549	lung
2	chr12:31775400-31779200	Weak transcription	Fetal Intestine Small	intestine
3	chr12:31775600-31782400	Weak transcription	HSMMtube	muscle
4	chr12:31775800-31779600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:31776000-31780600	Weak transcription	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links