Variant report

Variant	rs11051555
Chromosome Location	chr12:31900855-31900856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:31866804..31870237-chr12:31900678..31903673,4	K562	blood:
2	chr12:31867508..31869786-chr12:31900848..31903323,2	K562	blood:
3	chr12:31880350..31888706-chr12:31898122..31903847,15	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AMN1-2	chr12:31900809-31901031	NONHSAT027573

Variant related genes	Relation type
ENSG00000151743	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10844002	0.83[ASN][1000 genomes]
rs10844003	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11051525	0.83[AMR][1000 genomes]
rs11051541	0.85[AMR][1000 genomes]
rs11051545	0.85[AMR][1000 genomes]
rs11051559	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12367895	0.83[AMR][1000 genomes]
rs12813042	0.83[AMR][1000 genomes]
rs12813399	0.83[AMR][1000 genomes]
rs12813695	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35517071	0.82[AMR][1000 genomes]
rs7297921	0.83[AMR][1000 genomes]
rs7300260	0.85[AMR][1000 genomes]
rs7953551	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7960893	0.83[AMR][1000 genomes]
rs7969019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7970737	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7978407	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760267	chr12:31626732-31909908	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv1043010	chr12:31798446-32143151	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv541446	chr12:31798446-32143151	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3432694	chr12:31801467-32109828	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv898966	chr12:31810126-31944985	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	esv2422415	chr12:31863360-31930722	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv558100	chr12:31866833-32185924	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv1045464	chr12:31869888-32183792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	nsv541447	chr12:31869888-32183792	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
10	esv3363806	chr12:31872264-32410283	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
11	esv3508621	chr12:31872654-32410593	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
12	esv3508622	chr12:31872654-32410593	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
13	nsv558101	chr12:31876666-32006563	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	nsv1050448	chr12:31877289-31927006	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
15	nsv558102	chr12:31889824-31907409	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv975473	chr12:31895430-31908180	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv8940	chr12:31899904-31987363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
18	nsv442261	chr12:31900550-31909906	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	esv2421936	chr12:31900550-31909908	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	esv2760910	chr12:31900550-31909908	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv558103	chr12:31900550-31909908	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
22	nsv558104	chr12:31900550-31910908	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
23	nsv558105	chr12:31900550-31912588	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
24	nsv558106	chr12:31900550-31914143	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv558107	chr12:31900550-31919188	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31889400-31905800	Enhancers	Primary B cells from peripheral blood	blood
2	chr12:31893600-31905800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:31894400-31903400	Weak transcription	Spleen	Spleen
4	chr12:31895800-31902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:31896200-31903600	Weak transcription	Fetal Kidney	kidney
6	chr12:31896200-31903600	Weak transcription	Small Intestine	intestine
7	chr12:31896400-31902000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr12:31897600-31902400	Enhancers	Hela-S3	cervix
9	chr12:31899000-31901000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:31899000-31901000	Flanking Active TSS	GM12878-XiMat	blood
11	chr12:31899400-31903600	Weak transcription	Lung	lung
12	chr12:31899600-31901000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr12:31899600-31901200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr12:31899600-31905200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:31899800-31902000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr12:31900000-31901800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr12:31900000-31901800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr12:31900000-31901800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr12:31900000-31901800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr12:31900000-31901800	Weak transcription	Dnd41	blood
21	chr12:31900000-31902000	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr12:31900000-31902000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr12:31900000-31902000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr12:31900000-31902000	Weak transcription	Liver	Liver
25	chr12:31900000-31902000	Weak transcription	HSMM	muscle
26	chr12:31900000-31902000	Weak transcription	NHLF	lung
27	chr12:31900000-31902200	Weak transcription	Thymus	Thymus
28	chr12:31900000-31903200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr12:31900000-31903400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr12:31900000-31903600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr12:31900000-31905200	Weak transcription	Primary T cells from cord blood	blood
32	chr12:31900000-31905800	Enhancers	Primary B cells from cord blood	blood
33	chr12:31900000-31906400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr12:31900200-31901000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr12:31900200-31901200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr12:31900200-31901200	Weak transcription	NHEK	skin
37	chr12:31900200-31901800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr12:31900200-31901800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr12:31900200-31901800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr12:31900200-31901800	Weak transcription	Adipose Nuclei	Adipose
41	chr12:31900200-31901800	Weak transcription	NH-A	brain
42	chr12:31900200-31902000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr12:31900200-31902000	Weak transcription	NHDF-Ad	bronchial
44	chr12:31900200-31903400	ZNF genes & repeats	Fetal Intestine Small	intestine
45	chr12:31900400-31901400	Weak transcription	HepG2	liver
46	chr12:31900400-31901600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr12:31900400-31901600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr12:31900400-31901800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr12:31900400-31902000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr12:31900400-31902000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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