Variant report

Variant	rs11051764
Chromosome Location	chr12:32213611-32213612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:31835175..31835818-chr12:32213320..32214060,2	MCF-7	breast:
2	chr12:32112365..32113214-chr12:32213234..32213824,2	MCF-7	breast:
3	chr12:32213140..32214101-chr12:32454772..32455510,3	MCF-7	breast:
4	chr12:32213222..32214189-chr12:32464699..32465690,4	MCF-7	breast:
5	chr12:32213439..32214241-chr12:32496597..32497332,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174718	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1684118	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58519636	0.85[ASN][1000 genomes]
rs6488027	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363806	chr12:31872264-32410283	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3508621	chr12:31872654-32410593	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3508622	chr12:31872654-32410593	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3430326	chr12:32142734-32216569	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	esv3410287	chr12:32142734-32219420	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv976030	chr12:32153446-32307541	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv983498	chr12:32153446-32388092	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32212000-32215800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:32212400-32215600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:32212600-32215800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:32213200-32214000	Enhancers	Primary B cells from peripheral blood	blood
5	chr12:32213400-32213800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:32213400-32213800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:32213400-32213800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr12:32213400-32213800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr12:32213400-32213800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr12:32213400-32213800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr12:32213400-32213800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr12:32213400-32213800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:32213400-32213800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr12:32213400-32213800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr12:32213400-32213800	Active TSS	Fetal Intestine Small	intestine
16	chr12:32213400-32213800	Enhancers	Ovary	ovary
17	chr12:32213400-32213800	Active TSS	A549	lung
18	chr12:32213400-32213800	Enhancers	Hela-S3	cervix
19	chr12:32213400-32213800	Active TSS	Osteobl	bone
20	chr12:32213400-32214000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr12:32213400-32214000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr12:32213400-32214000	Enhancers	Colon Smooth Muscle	Colon
23	chr12:32213600-32213800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr12:32213600-32214000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr12:32213600-32214000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr12:32213600-32214000	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr12:32213600-32214000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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