Variant report

Variant	rs11051810
Chromosome Location	chr12:32287326-32287327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:32258933..32260496-chr12:32285593..32287517,2	MCF-7	breast:
2	chr12:32260677..32263592-chr12:32286494..32288195,2	MCF-7	breast:
3	chr12:32286132..32287839-chr12:32288847..32291147,2	K562	blood:

Variant related genes	Relation type
ENSG00000257530	Chromatin interaction
ENSG00000151746	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10844131	0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs10844133	0.80[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs10844149	0.80[CEU][hapmap]
rs11051806	0.82[ASN][1000 genomes]
rs11051809	0.84[ASN][1000 genomes]
rs12367017	0.84[ASN][1000 genomes]
rs12368434	0.88[ASN][1000 genomes]
rs2019690	0.82[ASN][1000 genomes]
rs2630576	0.81[EUR][1000 genomes]
rs2630577	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs3871520	0.82[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs7297597	0.83[EUR][1000 genomes]
rs7303443	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363806	chr12:31872264-32410283	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3508621	chr12:31872654-32410593	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3508622	chr12:31872654-32410593	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv976030	chr12:32153446-32307541	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv983498	chr12:32153446-32388092	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv898969	chr12:32224948-32375677	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1042317	chr12:32228872-32316774	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1041733	chr12:32247427-32312547	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
10	esv2751096	chr12:32280340-32702784	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv558171	chr12:32287259-32559693	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32262400-32287400	Weak transcription	Primary T cells from cord blood	blood
2	chr12:32262400-32290200	Weak transcription	Primary B cells from cord blood	blood
3	chr12:32269000-32287400	Weak transcription	Aorta	Aorta
4	chr12:32269000-32287400	Weak transcription	Spleen	Spleen
5	chr12:32269000-32340200	Weak transcription	Dnd41	blood
6	chr12:32272000-32288600	Weak transcription	Fetal Intestine Small	intestine
7	chr12:32273600-32292200	Weak transcription	Small Intestine	intestine
8	chr12:32278000-32292200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:32278000-32292400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr12:32278400-32292000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:32278800-32291800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr12:32278800-32291800	Weak transcription	HSMM	muscle
13	chr12:32281400-32292200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:32284400-32292400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr12:32284800-32287800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr12:32285200-32288200	Enhancers	Fetal Brain Male	brain
17	chr12:32285400-32288000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr12:32286200-32287400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr12:32286200-32287800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr12:32286400-32287600	Enhancers	Brain Hippocampus Middle	brain
21	chr12:32286400-32287800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr12:32286400-32287800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr12:32286400-32287800	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr12:32286400-32287800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr12:32286400-32287800	Enhancers	Fetal Brain Female	brain
26	chr12:32286400-32287800	Enhancers	NHLF	lung
27	chr12:32286400-32288000	Enhancers	Primary B cells from peripheral blood	blood
28	chr12:32286600-32287600	Enhancers	Colon Smooth Muscle	Colon
29	chr12:32286800-32287800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr12:32287000-32287400	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr12:32287000-32287400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr12:32287000-32287400	Enhancers	Fetal Stomach	stomach
33	chr12:32287000-32287600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr12:32287000-32287600	Enhancers	A549	lung
35	chr12:32287000-32287600	Flanking Active TSS	GM12878-XiMat	blood
36	chr12:32287000-32287600	Enhancers	HMEC	breast
37	chr12:32287000-32287600	Enhancers	HSMMtube	muscle
38	chr12:32287000-32287800	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr12:32287000-32287800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr12:32287000-32287800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr12:32287000-32287800	Enhancers	Muscle Satellite Cultured Cells	--
42	chr12:32287000-32287800	Enhancers	Brain Cingulate Gyrus	brain
43	chr12:32287000-32287800	Enhancers	Right Atrium	heart
44	chr12:32287000-32287800	Enhancers	Stomach Mucosa	stomach
45	chr12:32287000-32287800	Enhancers	HUVEC	blood vessel
46	chr12:32287000-32287800	Enhancers	K562	blood
47	chr12:32287000-32287800	Enhancers	NHDF-Ad	bronchial
48	chr12:32287000-32287800	Enhancers	Osteobl	bone
49	chr12:32287000-32288000	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr12:32287000-32288000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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