Variant report

Variant	rs11051922
Chromosome Location	chr12:32458756-32458757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32457548..32459498-chr12:32831909..32834006,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000087470	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11051855	1.00[CEU][hapmap]
rs11612914	0.82[CEU][hapmap];1.00[AMR][1000 genomes]
rs12368042	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12369637	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2751096	chr12:32280340-32702784	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv558171	chr12:32287259-32559693	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832366	chr12:32328559-32511360	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32427000-32459400	Weak transcription	Aorta	Aorta
2	chr12:32427000-32463000	Weak transcription	NHLF	lung
3	chr12:32427200-32463000	Weak transcription	Fetal Intestine Small	intestine
4	chr12:32443400-32461000	Weak transcription	Primary T cells from cord blood	blood
5	chr12:32443600-32458800	Weak transcription	HMEC	breast
6	chr12:32443600-32461200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:32443600-32463200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr12:32443600-32465000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr12:32443800-32460200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr12:32443800-32464600	Weak transcription	NHDF-Ad	bronchial
11	chr12:32443800-32464800	Weak transcription	Brain Substantia Nigra	brain
12	chr12:32443800-32480400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr12:32444000-32460600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:32444200-32465000	Weak transcription	Hela-S3	cervix
15	chr12:32445200-32458800	Weak transcription	Fetal Stomach	stomach
16	chr12:32445400-32464000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr12:32445600-32463600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr12:32445800-32464800	Weak transcription	Brain Hippocampus Middle	brain
19	chr12:32446000-32461600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr12:32447000-32463000	Weak transcription	Brain Germinal Matrix	brain
21	chr12:32447400-32463000	Weak transcription	Fetal Thymus	thymus
22	chr12:32447600-32465000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr12:32448200-32463000	Weak transcription	HUVEC	blood vessel
24	chr12:32448400-32463200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr12:32448600-32458800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr12:32448600-32461000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr12:32448600-32462600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr12:32449000-32463000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr12:32449200-32480400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr12:32449600-32490200	Weak transcription	HSMMtube	muscle
31	chr12:32449800-32462400	Weak transcription	Fetal Intestine Large	intestine
32	chr12:32450000-32462800	Weak transcription	Pancreas	Pancrea
33	chr12:32450200-32464800	Weak transcription	Adipose Nuclei	Adipose
34	chr12:32450200-32464800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr12:32450400-32462800	Weak transcription	Fetal Brain Female	brain
36	chr12:32450400-32480200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr12:32451200-32459200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr12:32452400-32458800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr12:32452400-32458800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr12:32452400-32463000	Weak transcription	Small Intestine	intestine
41	chr12:32452400-32463200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr12:32452600-32460200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr12:32452600-32462800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr12:32452800-32465000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr12:32453000-32463200	Weak transcription	Right Atrium	heart
46	chr12:32454400-32462000	Weak transcription	Lung	lung
47	chr12:32454400-32463000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr12:32454400-32463000	Weak transcription	A549	lung
49	chr12:32454800-32462800	Weak transcription	Left Ventricle	heart
50	chr12:32454800-32465000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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