Variant report

Variant	rs11052090
Chromosome Location	chr12:32741055-32741056
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10047581	0.92[CHB][hapmap]
rs10129039	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10129043	0.95[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10161053	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10743799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10743800	0.95[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10771965	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10771966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10771967	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844251	0.91[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11052094	0.91[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs11052100	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1472501	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1472502	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1909513	0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1979824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1979826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036267	0.95[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2291882	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2291883	0.99[ASN][1000 genomes]
rs2291884	1.00[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs2389102	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2389103	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389104	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4931018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4931021	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4931023	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4931026	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4931639	0.92[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs4931640	0.82[ASN][1000 genomes]
rs4931641	0.84[EUR][1000 genomes]
rs6488067	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6488068	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488069	0.92[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs6488070	0.83[ASN][1000 genomes]
rs6488071	0.95[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7300661	0.91[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7308071	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7311621	0.99[ASN][1000 genomes]
rs7315971	0.97[ASN][1000 genomes]
rs7316616	0.83[ASN][1000 genomes]
rs7954226	0.91[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7962088	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7964734	0.93[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs7965993	0.95[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7968781	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7968790	0.80[ASN][1000 genomes]
rs7971634	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7977053	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs7979016	0.95[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs904582	1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32713000-32780400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr12:32713400-32796200	Weak transcription	Fetal Lung	lung
3	chr12:32715200-32753800	Weak transcription	Fetal Brain Female	brain
4	chr12:32715200-32760200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:32719800-32741400	Weak transcription	Spleen	Spleen
6	chr12:32720000-32764800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:32720200-32778400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr12:32721400-32743600	Weak transcription	Fetal Heart	heart
9	chr12:32722600-32754400	Weak transcription	Colonic Mucosa	Colon
10	chr12:32722600-32757600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr12:32722600-32764800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr12:32722600-32764800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr12:32722600-32764800	Weak transcription	Psoas Muscle	Psoas
14	chr12:32722600-32779400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr12:32723600-32756600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr12:32725200-32743800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr12:32725200-32778600	Weak transcription	Fetal Brain Male	brain
18	chr12:32726000-32741600	Weak transcription	Stomach Mucosa	stomach
19	chr12:32728600-32757000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr12:32731800-32753400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr12:32732400-32741200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr12:32732400-32744600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:32732400-32756600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr12:32733200-32741400	Weak transcription	Brain Hippocampus Middle	brain
25	chr12:32733200-32764800	Weak transcription	Esophagus	oesophagus
26	chr12:32735400-32743600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr12:32735400-32758400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr12:32735400-32765000	Weak transcription	Small Intestine	intestine
29	chr12:32735600-32741200	Weak transcription	Brain Substantia Nigra	brain
30	chr12:32735600-32742600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr12:32735600-32744600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr12:32735600-32754400	Weak transcription	Aorta	Aorta
33	chr12:32735800-32753800	Weak transcription	Placenta	Placenta
34	chr12:32736200-32746400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr12:32736200-32764000	Weak transcription	Brain Germinal Matrix	brain
36	chr12:32736400-32744400	Weak transcription	Pancreas	Pancrea
37	chr12:32736400-32754200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr12:32736400-32760200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr12:32736600-32744200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr12:32736600-32747000	Weak transcription	Ovary	ovary
41	chr12:32736600-32757000	Weak transcription	HepG2	liver
42	chr12:32736800-32757400	Weak transcription	Fetal Kidney	kidney
43	chr12:32737200-32741200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr12:32737200-32743400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr12:32737200-32754200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr12:32738200-32741200	Enhancers	HUVEC	blood vessel
47	chr12:32738200-32743200	Enhancers	Fetal Thymus	thymus
48	chr12:32738400-32741200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr12:32738400-32743000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr12:32738400-32743800	Enhancers	Primary monocytes fromperipheralblood	blood

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