Variant report

Variant	rs11052174
Chromosome Location	chr12:32840677-32840678
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32831590..32834030-chr12:32840006..32842096,3	MCF-7	breast:
2	chr12:32830563..32837443-chr12:32839291..32843812,9	K562	blood:

Variant related genes	Relation type
ENSG00000087470	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11052153	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11052187	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11052194	0.89[AMR][1000 genomes]
rs11052204	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17613295	0.89[AMR][1000 genomes]
rs73298089	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32833200-32840800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr12:32833200-32841200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr12:32833200-32841800	Weak transcription	Lung	lung
4	chr12:32833200-32841800	Weak transcription	Pancreas	Pancrea
5	chr12:32833200-32841800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr12:32833200-32842200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:32833200-32846600	Weak transcription	Psoas Muscle	Psoas
8	chr12:32833200-32848400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:32833200-32848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:32833200-32864000	Weak transcription	Esophagus	oesophagus
11	chr12:32833200-32864600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr12:32833400-32854200	Weak transcription	Placenta	Placenta
13	chr12:32833400-32859000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr12:32833400-32864000	Weak transcription	Thymus	Thymus
15	chr12:32833600-32840800	Weak transcription	Fetal Muscle Leg	muscle
16	chr12:32833600-32841400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr12:32833600-32847200	Weak transcription	HSMM	muscle
18	chr12:32833600-32854400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr12:32833600-32861400	Weak transcription	Right Atrium	heart
20	chr12:32833600-32861800	Weak transcription	Fetal Thymus	thymus
21	chr12:32833800-32859000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr12:32833800-32863000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr12:32834000-32848600	Weak transcription	Fetal Kidney	kidney
24	chr12:32834200-32841400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr12:32834200-32841600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr12:32834200-32842600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr12:32834200-32844600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr12:32834200-32844600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr12:32834200-32845400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr12:32834200-32847800	Weak transcription	Fetal Brain Female	brain
31	chr12:32834200-32848400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr12:32834200-32854200	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr12:32834200-32864800	Weak transcription	Colon Smooth Muscle	Colon
34	chr12:32834200-32865000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr12:32834200-32871400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr12:32834400-32841400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr12:32834400-32841400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr12:32834400-32841600	Weak transcription	Brain Angular Gyrus	brain
39	chr12:32834400-32841600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr12:32834400-32842600	Weak transcription	NHLF	lung
41	chr12:32834400-32843400	Weak transcription	Adipose Nuclei	Adipose
42	chr12:32834400-32845200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr12:32834400-32845400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr12:32834400-32845400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr12:32834400-32846600	Weak transcription	Primary hematopoietic stem cells	blood
46	chr12:32834400-32847600	Weak transcription	Fetal Intestine Large	intestine
47	chr12:32834400-32847600	Weak transcription	Ovary	ovary
48	chr12:32834400-32854000	Weak transcription	HUVEC	blood vessel
49	chr12:32834400-32856200	Weak transcription	NH-A	brain
50	chr12:32834400-32859200	Weak transcription	Liver	Liver

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