Variant report

Variant	rs11052362
Chromosome Location	chr12:33124965-33124966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10772021	0.83[EUR][1000 genomes]
rs10772022	0.83[EUR][1000 genomes]
rs10844399	0.86[EUR][1000 genomes]
rs10844400	0.83[EUR][1000 genomes]
rs10844402	0.83[EUR][1000 genomes]
rs11052330	0.83[EUR][1000 genomes]
rs11052331	0.83[EUR][1000 genomes]
rs11052333	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11829236	0.86[EUR][1000 genomes]
rs11835806	0.86[EUR][1000 genomes]
rs11836601	0.86[EUR][1000 genomes]
rs12099450	0.83[EUR][1000 genomes]
rs12227043	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12230884	0.83[EUR][1000 genomes]
rs12578228	0.87[AFR][1000 genomes]
rs12579660	0.87[AFR][1000 genomes]
rs12581096	0.82[AMR][1000 genomes]
rs1500053	0.87[AFR][1000 genomes]
rs4128506	0.83[EUR][1000 genomes]
rs58976563	0.86[EUR][1000 genomes]
rs61629978	0.82[EUR][1000 genomes]
rs7132974	0.82[EUR][1000 genomes]
rs72640188	0.87[AFR][1000 genomes]
rs7302247	0.86[EUR][1000 genomes]
rs7976911	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33124800-33125600	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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